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The map label for this gene is 108797620

Identifier: 108797620

GI number: 108797620

Start: 703869

End: 704576

Strand: Reverse

Name: 108797620

Synonym: Mmcs_0640

Alternate gene names: NA

Gene position: 704576-703869 (Counterclockwise)

Preceding gene: 108797627

Following gene: 108797619

Centisome position: 12.35

GC content: 64.97

Gene sequence:

>708_bases
GTGGCACAACAGACCCCGCCTTTGGCGGTCAAGACCGATGGTCGGAAGCGGCGCTGGCACCAGCACAAGGTCGAGCGCCG
CAATGAGTTGGTCGATGGCACCCTGGAGGCGATCCGCCGCCGGGGCAGCAACGTCAGCATGGACGAGATCGCCGCGGAGA
TCGGCGTTTCCAAGACGGTCCTGTACCGCTACTTCGTCGACAAGAACGACCTCACCACCGCGGTGATGATGCGGTTCGCC
CAGACCACACTGATCCCGAACATGGCCGCGGCGCTGATGTCCAACCTCGACGGCTACGACCTGACCCGCGAGATCATCAA
GGTCTACGTCGAGACCGTCGCGAACGAGCCGGAGCCCTACCGCTTCGTGATGGCGAACAACTCGGCCAGCAAGAGCAAGG
CCGTCGCGGACTCCGAACGCATCATCGCCCGCATGCTCGCGGTGATGCTGCGCCGCCGGATGGCCCAGGCCGGGATGGAC
ACCGGCGGCGTCGAGCCGTGGGCCTATCACATCGTCGGCGGCGTGCAGCTGGCCACGCACTCGTGGATGTCGCATCCGCG
GATGAGCGCCGACGAACTCATCGACTACCTGACGATGCTGTCGTGGAGTGCGTTGTGCGGCATCGTCGAAGTAGGCGGAT
CGCTCGAGAAGTTCCGGTCCGAACCGCACCCCTCCCCGATCCTGCCTCCCCAGTTGATGGAGCAATGA

Upstream 100 bases:

>100_bases
TCCATCATCCGCTATCCCGTCAGCGCAGCGGTCCGACGCGGCTGTCGGCGCCGATCCGCCGTAGTATCGAGACGGACTAG
TGAACGGGACTACGGGGATA

Downstream 100 bases:

>100_bases
GCCGAGAACCCGAGCTACCCGCCCTGTGGTCCCACGACCCGCATGTCCACCTCCGCTTCCGTACCGGCGACAAGGTGGGC
GACATCGAGACCGACGCCAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MAQQTPPLAVKTDGRKRRWHQHKVERRNELVDGTLEAIRRRGSNVSMDEIAAEIGVSKTVLYRYFVDKNDLTTAVMMRFA
QTTLIPNMAAALMSNLDGYDLTREIIKVYVETVANEPEPYRFVMANNSASKSKAVADSERIIARMLAVMLRRRMAQAGMD
TGGVEPWAYHIVGGVQLATHSWMSHPRMSADELIDYLTMLSWSALCGIVEVGGSLEKFRSEPHPSPILPPQLMEQ

Sequences:

>Translated_235_residues
MAQQTPPLAVKTDGRKRRWHQHKVERRNELVDGTLEAIRRRGSNVSMDEIAAEIGVSKTVLYRYFVDKNDLTTAVMMRFA
QTTLIPNMAAALMSNLDGYDLTREIIKVYVETVANEPEPYRFVMANNSASKSKAVADSERIIARMLAVMLRRRMAQAGMD
TGGVEPWAYHIVGGVQLATHSWMSHPRMSADELIDYLTMLSWSALCGIVEVGGSLEKFRSEPHPSPILPPQLMEQ
>Mature_234_residues
AQQTPPLAVKTDGRKRRWHQHKVERRNELVDGTLEAIRRRGSNVSMDEIAAEIGVSKTVLYRYFVDKNDLTTAVMMRFAQ
TTLIPNMAAALMSNLDGYDLTREIIKVYVETVANEPEPYRFVMANNSASKSKAVADSERIIARMLAVMLRRRMAQAGMDT
GGVEPWAYHIVGGVQLATHSWMSHPRMSADELIDYLTMLSWSALCGIVEVGGSLEKFRSEPHPSPILPPQLMEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26420; Mature: 26289

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQTPPLAVKTDGRKRRWHQHKVERRNELVDGTLEAIRRRGSNVSMDEIAAEIGVSKTV
CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHH
LYRYFVDKNDLTTAVMMRFAQTTLIPNMAAALMSNLDGYDLTREIIKVYVETVANEPEPY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCE
RFVMANNSASKSKAVADSERIIARMLAVMLRRRMAQAGMDTGGVEPWAYHIVGGVQLATH
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SWMSHPRMSADELIDYLTMLSWSALCGIVEVGGSLEKFRSEPHPSPILPPQLMEQ
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
AQQTPPLAVKTDGRKRRWHQHKVERRNELVDGTLEAIRRRGSNVSMDEIAAEIGVSKTV
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHH
LYRYFVDKNDLTTAVMMRFAQTTLIPNMAAALMSNLDGYDLTREIIKVYVETVANEPEPY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCE
RFVMANNSASKSKAVADSERIIARMLAVMLRRRMAQAGMDTGGVEPWAYHIVGGVQLATH
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SWMSHPRMSADELIDYLTMLSWSALCGIVEVGGSLEKFRSEPHPSPILPPQLMEQ
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]