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The map label for this gene is yagA [H]

Identifier: 108797602

GI number: 108797602

Start: 684463

End: 685743

Strand: Reverse

Name: yagA [H]

Synonym: Mmcs_0622

Alternate gene names: 108797602

Gene position: 685743-684463 (Counterclockwise)

Preceding gene: 108797603

Following gene: 108797601

Centisome position: 12.02

GC content: 66.2

Gene sequence:

>1281_bases
GTGGTGGCTGTCAATGAACCCATCGATCCTCTCGTTCGGCTGGCGATCTCGCAGTGGCCCGATAACGCTCCTCGCGGAGC
GGTGTCGACGTTCTGCGCCGAGTACGGCATTTCGCGTAAGTCGTTCTACGAGTTGCGTAAGCGTGTGAAGACTGAGGGGC
CGGCAGCGGTGCTCGAACCGATGACACGACGACCGAAGTCGAGTCCCTCGAAGCTGAGCGACGAGGTCAAGGAACAGGCC
TTGGCCGTACGTGCCGCTCTGGAGGCCACCGGGCTGGATCACGGCCCGATCAGCGTGCACGACAAGATGCACGCGATGGG
CCTAGAGCGGGTCCCTTCCACGGCGTCGCTGGCGCGGGTGTTCCGTGAGGCGGGCGTGGCTCGCCTGGAGCCGAAGAAGA
AGCCGCGCTCGGCTTGGCGGCGTTTCGTCTACCCGGCGCCAAACGCATGCTGGCAACTCGACGCCACCGAGTACGTGTTG
AGCGGCGGGCGCAGGTGCGTGATCTTTCAGCTCATCGACGACCACTCCCGCTACGCGCTCGCCTCCCACGTCGCACTCAG
CGAGACCGCCAAGGAGGCGATCGCCGTGGTAGATAAAGCCATCGCCGCCCACGGGGTGCCCCAACGGCTGCTGTCGGACA
ACGGGATCGCGCTCAACCCGTCACGGCGTGGGCATGTCGGCCAACTCGTCGCCCACCTGGCCGCCCTGGGCGTGGAGGCG
ATCACCGGCAAGCCCTACAAGCCGACCACCCAGGGCAAGAACGAACGTTTCCATCAGACCCTGTTCCGCTACCTCGACAA
GCAGCCGATCGCCGAGTCGCTGGCCGAACTGCAGTGCCACGTCGACGCCTTCGACGGCATCTACAACACCGAACGCCCCC
ACCAAGGGCTACCGGGGCGTGTCACACCCCGCACGGCATGGGAGGCAACCGCCAAAGCGCCGGCTCCTCGTCCCAAGCCC
GACCCGCCCTCGTTCGACCACGCCGTAGTCAGACCACACCGGCCCGCACCGACGCCCGCGGACCTCCCACACGGCACTTC
GGTCAAGACTCTCAATACCGCCGGCGCCTTCGTCCTCGCCGGCGTCACCTACAAAGTCGACGGACGACGCAGTCTCGAGC
AGGTCCTAGTCGTCATCGACGGCGACAAGATCACCGCGGCCGACCTAGACGGCGAAGTCCTCATCGAACACACCCGCCCC
GCACCCGGAATCACCTACGTCGGCAACGGACGACCCCGCGGCCCACACCCCAAGACCACCCAAACGTCACCGAAGTCCTG
A

Upstream 100 bases:

>100_bases
CACCCGTGTCATCTCTCAGGACATCGGTGACAGTTCTGCATCAGGACATCGGTGACGGTTCTGGTGGTCTTGGTGGTGAC
AGTTCTGCCCCGAGGCTGCG

Downstream 100 bases:

>100_bases
CACATCAACCGTCACCGATGTCCTGATACAGAACGGTCACCGATGTTTTGAGACATCACAGCGGGTTGTCACCCGTCGAC
GCTACAATCGAACACATGTT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MVAVNEPIDPLVRLAISQWPDNAPRGAVSTFCAEYGISRKSFYELRKRVKTEGPAAVLEPMTRRPKSSPSKLSDEVKEQA
LAVRAALEATGLDHGPISVHDKMHAMGLERVPSTASLARVFREAGVARLEPKKKPRSAWRRFVYPAPNACWQLDATEYVL
SGGRRCVIFQLIDDHSRYALASHVALSETAKEAIAVVDKAIAAHGVPQRLLSDNGIALNPSRRGHVGQLVAHLAALGVEA
ITGKPYKPTTQGKNERFHQTLFRYLDKQPIAESLAELQCHVDAFDGIYNTERPHQGLPGRVTPRTAWEATAKAPAPRPKP
DPPSFDHAVVRPHRPAPTPADLPHGTSVKTLNTAGAFVLAGVTYKVDGRRSLEQVLVVIDGDKITAADLDGEVLIEHTRP
APGITYVGNGRPRGPHPKTTQTSPKS

Sequences:

>Translated_426_residues
MVAVNEPIDPLVRLAISQWPDNAPRGAVSTFCAEYGISRKSFYELRKRVKTEGPAAVLEPMTRRPKSSPSKLSDEVKEQA
LAVRAALEATGLDHGPISVHDKMHAMGLERVPSTASLARVFREAGVARLEPKKKPRSAWRRFVYPAPNACWQLDATEYVL
SGGRRCVIFQLIDDHSRYALASHVALSETAKEAIAVVDKAIAAHGVPQRLLSDNGIALNPSRRGHVGQLVAHLAALGVEA
ITGKPYKPTTQGKNERFHQTLFRYLDKQPIAESLAELQCHVDAFDGIYNTERPHQGLPGRVTPRTAWEATAKAPAPRPKP
DPPSFDHAVVRPHRPAPTPADLPHGTSVKTLNTAGAFVLAGVTYKVDGRRSLEQVLVVIDGDKITAADLDGEVLIEHTRP
APGITYVGNGRPRGPHPKTTQTSPKS
>Mature_426_residues
MVAVNEPIDPLVRLAISQWPDNAPRGAVSTFCAEYGISRKSFYELRKRVKTEGPAAVLEPMTRRPKSSPSKLSDEVKEQA
LAVRAALEATGLDHGPISVHDKMHAMGLERVPSTASLARVFREAGVARLEPKKKPRSAWRRFVYPAPNACWQLDATEYVL
SGGRRCVIFQLIDDHSRYALASHVALSETAKEAIAVVDKAIAAHGVPQRLLSDNGIALNPSRRGHVGQLVAHLAALGVEA
ITGKPYKPTTQGKNERFHQTLFRYLDKQPIAESLAELQCHVDAFDGIYNTERPHQGLPGRVTPRTAWEATAKAPAPRPKP
DPPSFDHAVVRPHRPAPTPADLPHGTSVKTLNTAGAFVLAGVTYKVDGRRSLEQVLVVIDGDKITAADLDGEVLIEHTRP
APGITYVGNGRPRGPHPKTTQTSPKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=337, Percent_Identity=27.893175074184, Blast_Score=112, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 46320; Mature: 46320

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAVNEPIDPLVRLAISQWPDNAPRGAVSTFCAEYGISRKSFYELRKRVKTEGPAAVLEP
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH
MTRRPKSSPSKLSDEVKEQALAVRAALEATGLDHGPISVHDKMHAMGLERVPSTASLARV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
FREAGVARLEPKKKPRSAWRRFVYPAPNACWQLDATEYVLSGGRRCVIFQLIDDHSRYAL
HHHCCCHHCCCCCCHHHHHHHCCCCCCCCCEECCCHHHHHCCCCEEEEEEEECCCCHHHH
ASHVALSETAKEAIAVVDKAIAAHGVPQRLLSDNGIALNPSRRGHVGQLVAHLAALGVEA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCHHH
ITGKPYKPTTQGKNERFHQTLFRYLDKQPIAESLAELQCHVDAFDGIYNTERPHQGLPGR
HCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
VTPRTAWEATAKAPAPRPKPDPPSFDHAVVRPHRPAPTPADLPHGTSVKTLNTAGAFVLA
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE
GVTYKVDGRRSLEQVLVVIDGDKITAADLDGEVLIEHTRPAPGITYVGNGRPRGPHPKTT
CEEEEECCHHCCEEEEEEECCCEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCCCCCC
QTSPKS
CCCCCC
>Mature Secondary Structure
MVAVNEPIDPLVRLAISQWPDNAPRGAVSTFCAEYGISRKSFYELRKRVKTEGPAAVLEP
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH
MTRRPKSSPSKLSDEVKEQALAVRAALEATGLDHGPISVHDKMHAMGLERVPSTASLARV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
FREAGVARLEPKKKPRSAWRRFVYPAPNACWQLDATEYVLSGGRRCVIFQLIDDHSRYAL
HHHCCCHHCCCCCCHHHHHHHCCCCCCCCCEECCCHHHHHCCCCEEEEEEEECCCCHHHH
ASHVALSETAKEAIAVVDKAIAAHGVPQRLLSDNGIALNPSRRGHVGQLVAHLAALGVEA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCHHH
ITGKPYKPTTQGKNERFHQTLFRYLDKQPIAESLAELQCHVDAFDGIYNTERPHQGLPGR
HCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
VTPRTAWEATAKAPAPRPKPDPPSFDHAVVRPHRPAPTPADLPHGTSVKTLNTAGAFVLA
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE
GVTYKVDGRRSLEQVLVVIDGDKITAADLDGEVLIEHTRPAPGITYVGNGRPRGPHPKTT
CEEEEECCHHCCEEEEEEECCCEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCCCCCC
QTSPKS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]