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The map label for this gene is ybiR [C]

Identifier: 108797567

GI number: 108797567

Start: 646761

End: 648074

Strand: Reverse

Name: ybiR [C]

Synonym: Mmcs_0587

Alternate gene names: 108797567

Gene position: 648074-646761 (Counterclockwise)

Preceding gene: 108797568

Following gene: 108797566

Centisome position: 11.36

GC content: 66.67

Gene sequence:

>1314_bases
GTGTCAGCAGCTCCGGCCGTGTCGTTCTCGCCGGCTCCGGTGCTCGCACTGGCGATCTTCGTCGTCGCGTTCTGGTTCAT
CGCCACCGAGCGGGCCGACAAGGTCAAGACCGTCCTCGTCGCCGCCGGGCTGATGGCCCTGCTCGGCCTGATCCCCGGCG
AGCAGGTCTTCTACTCCGAGCATGCGGGCATCGACTGGAACGTCATCTTCCTGCTGCTCGGGATGATGGTCATCGTCGGC
GTCGTGAAGCAGACCGGACTGTTCGACTTCCTGGCGATTTGGGCGGCGAAACGCTCGCAGGGCAAACCCTTCCGGCTGAT
GGTCATGCTGATGCTGATCACCGCGTTCGCCTCACCGGTGCTCGACAATGTCACGATCATCCTGCTGATCGCACCCGTGA
CGCTGGTCATCTGCGATCGACTGCGGATCGCGCCGCAGCCCTACCTGATCGCCGAGGTGCTCGCGTCCAACATCGGCGGC
GCGGCCACGCTGATCGGCGACCCGCCCAACATCATCATCGGCAGTCGCGCCGGCCTGACGTTCAACGACTTCCTGGTCCA
CATGGCACCGATCGTGCTGGTCATCTTCGCCCTGTTCGTGGCCTCGACCCGGGTACTGTTCCGGAAAGATCTGCGCGCCA
ACGACATCCGCATGGACGAGGTGATGGCGCTGCAGGAGCGCCGGGCGATCAGGGACCCGCGGCTGCTGGTCCGCTCCCTG
GTGGTGCTGAACCTCGTCATCGTCGGGTTCGCCCTGCACTCGGTGCTGCACGTGGCGCCGTCGGTGGTGGCGCTGCTCGG
CGCCGGGGTGATGCTGTTGGTGACCGACATCGACGTGGGCGAGGTGCTGCCGGAGGTGGAGTGGCCGACCCTGGTGTTCT
TCATGGGTCTGTTCGTGATGGTGGCCGGTTTGACGCACACCGGGGTGATCGACGCACTCGGTTCGGTCGCCGAGTCGGCC
TTCGGCGACAACTGGTTCGGGGCGGCCACCGCCCTGCTGTTCGGATCGTCGATCGTCGGCGCCTTCGTCGACAACATCCC
CTACACCGCGACGATGACGCCGGTCGTCGAGTCGATGGTGACCCAGACACCCGACGTGGCCACCGGCCAGGCGCTGTGGT
GGGCGTTCGCGTTGGGCGCGTGCTTCAGCGGCAACGGCACCGCGATCGCCGCCAGCGCCAACGTGGTGGCGATCGGCATC
GCCGCGCGGGCCGGCCACCCCATCAGCTTCTGGCGGTTCACCCGCTACGGGATCGTCGTGACCCTGCTCAGCACCACCCT
GGCCTGGGGCTACGTCTGGCTGAGGTACTTCTGA

Upstream 100 bases:

>100_bases
TGACGGCGCTGGGCGATTGACCGGTGCGGTGACCCTCGAACGGCTGCTGACCAGTCTGGCCGTCGCCGGCCCGGGCGACT
GATCCCGGCTCTGCGAGCGC

Downstream 100 bases:

>100_bases
TGAAGCACCGTCGGCAGTGGGCCGCCGATCCCGTCAGCAACGCACGTAGAATTGACACAATCCAAAGCAGCTGAGGCTGA
CACCCCGACCCCAATCAAGA

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSAAPAVSFSPAPVLALAIFVVAFWFIATERADKVKTVLVAAGLMALLGLIPGEQVFYSEHAGIDWNVIFLLLGMMVIVG
VVKQTGLFDFLAIWAAKRSQGKPFRLMVMLMLITAFASPVLDNVTIILLIAPVTLVICDRLRIAPQPYLIAEVLASNIGG
AATLIGDPPNIIIGSRAGLTFNDFLVHMAPIVLVIFALFVASTRVLFRKDLRANDIRMDEVMALQERRAIRDPRLLVRSL
VVLNLVIVGFALHSVLHVAPSVVALLGAGVMLLVTDIDVGEVLPEVEWPTLVFFMGLFVMVAGLTHTGVIDALGSVAESA
FGDNWFGAATALLFGSSIVGAFVDNIPYTATMTPVVESMVTQTPDVATGQALWWAFALGACFSGNGTAIAASANVVAIGI
AARAGHPISFWRFTRYGIVVTLLSTTLAWGYVWLRYF

Sequences:

>Translated_437_residues
MSAAPAVSFSPAPVLALAIFVVAFWFIATERADKVKTVLVAAGLMALLGLIPGEQVFYSEHAGIDWNVIFLLLGMMVIVG
VVKQTGLFDFLAIWAAKRSQGKPFRLMVMLMLITAFASPVLDNVTIILLIAPVTLVICDRLRIAPQPYLIAEVLASNIGG
AATLIGDPPNIIIGSRAGLTFNDFLVHMAPIVLVIFALFVASTRVLFRKDLRANDIRMDEVMALQERRAIRDPRLLVRSL
VVLNLVIVGFALHSVLHVAPSVVALLGAGVMLLVTDIDVGEVLPEVEWPTLVFFMGLFVMVAGLTHTGVIDALGSVAESA
FGDNWFGAATALLFGSSIVGAFVDNIPYTATMTPVVESMVTQTPDVATGQALWWAFALGACFSGNGTAIAASANVVAIGI
AARAGHPISFWRFTRYGIVVTLLSTTLAWGYVWLRYF
>Mature_436_residues
SAAPAVSFSPAPVLALAIFVVAFWFIATERADKVKTVLVAAGLMALLGLIPGEQVFYSEHAGIDWNVIFLLLGMMVIVGV
VKQTGLFDFLAIWAAKRSQGKPFRLMVMLMLITAFASPVLDNVTIILLIAPVTLVICDRLRIAPQPYLIAEVLASNIGGA
ATLIGDPPNIIIGSRAGLTFNDFLVHMAPIVLVIFALFVASTRVLFRKDLRANDIRMDEVMALQERRAIRDPRLLVRSLV
VLNLVIVGFALHSVLHVAPSVVALLGAGVMLLVTDIDVGEVLPEVEWPTLVFFMGLFVMVAGLTHTGVIDALGSVAESAF
GDNWFGAATALLFGSSIVGAFVDNIPYTATMTPVVESMVTQTPDVATGQALWWAFALGACFSGNGTAIAASANVVAIGIA
ARAGHPISFWRFTRYGIVVTLLSTTLAWGYVWLRYF

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=447, Percent_Identity=34.4519015659955, Blast_Score=204, Evalue=2e-52,
Organism=Escherichia coli, GI1787039, Length=413, Percent_Identity=26.1501210653753, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082277, Length=369, Percent_Identity=24.1192411924119, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24581759, Length=488, Percent_Identity=31.9672131147541, Blast_Score=205, Evalue=6e-53,
Organism=Drosophila melanogaster, GI19920704, Length=443, Percent_Identity=33.6343115124154, Blast_Score=205, Evalue=6e-53,
Organism=Drosophila melanogaster, GI28574683, Length=488, Percent_Identity=31.9672131147541, Blast_Score=204, Evalue=7e-53,
Organism=Drosophila melanogaster, GI28574681, Length=488, Percent_Identity=31.9672131147541, Blast_Score=204, Evalue=7e-53,
Organism=Drosophila melanogaster, GI28574685, Length=488, Percent_Identity=31.9672131147541, Blast_Score=204, Evalue=7e-53,
Organism=Drosophila melanogaster, GI28574678, Length=488, Percent_Identity=31.9672131147541, Blast_Score=204, Evalue=7e-53,
Organism=Drosophila melanogaster, GI45550608, Length=481, Percent_Identity=32.2245322245322, Blast_Score=159, Evalue=4e-39,
Organism=Drosophila melanogaster, GI85724998, Length=452, Percent_Identity=25.8849557522124, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI62484377, Length=453, Percent_Identity=25.8278145695364, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24656008, Length=473, Percent_Identity=25.369978858351, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI221472711, Length=182, Percent_Identity=32.4175824175824, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24581764, Length=182, Percent_Identity=32.4175824175824, Blast_Score=94, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 46844; Mature: 46713

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAPAVSFSPAPVLALAIFVVAFWFIATERADKVKTVLVAAGLMALLGLIPGEQVFYSE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
HAGIDWNVIFLLLGMMVIVGVVKQTGLFDFLAIWAAKRSQGKPFRLMVMLMLITAFASPV
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LDNVTIILLIAPVTLVICDRLRIAPQPYLIAEVLASNIGGAATLIGDPPNIIIGSRAGLT
HHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCC
FNDFLVHMAPIVLVIFALFVASTRVLFRKDLRANDIRMDEVMALQERRAIRDPRLLVRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
VVLNLVIVGFALHSVLHVAPSVVALLGAGVMLLVTDIDVGEVLPEVEWPTLVFFMGLFVM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHH
VAGLTHTGVIDALGSVAESAFGDNWFGAATALLFGSSIVGAFVDNIPYTATMTPVVESMV
HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
TQTPDVATGQALWWAFALGACFSGNGTAIAASANVVAIGIAARAGHPISFWRFTRYGIVV
HCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHH
TLLSTTLAWGYVWLRYF
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SAAPAVSFSPAPVLALAIFVVAFWFIATERADKVKTVLVAAGLMALLGLIPGEQVFYSE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
HAGIDWNVIFLLLGMMVIVGVVKQTGLFDFLAIWAAKRSQGKPFRLMVMLMLITAFASPV
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LDNVTIILLIAPVTLVICDRLRIAPQPYLIAEVLASNIGGAATLIGDPPNIIIGSRAGLT
HHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCC
FNDFLVHMAPIVLVIFALFVASTRVLFRKDLRANDIRMDEVMALQERRAIRDPRLLVRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
VVLNLVIVGFALHSVLHVAPSVVALLGAGVMLLVTDIDVGEVLPEVEWPTLVFFMGLFVM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHH
VAGLTHTGVIDALGSVAESAFGDNWFGAATALLFGSSIVGAFVDNIPYTATMTPVVESMV
HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
TQTPDVATGQALWWAFALGACFSGNGTAIAASANVVAIGIAARAGHPISFWRFTRYGIVV
HCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHH
TLLSTTLAWGYVWLRYF
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]