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The map label for this gene is dedA [C]

Identifier: 108797481

GI number: 108797481

Start: 557345

End: 558040

Strand: Reverse

Name: dedA [C]

Synonym: Mmcs_0501

Alternate gene names: 108797481

Gene position: 558040-557345 (Counterclockwise)

Preceding gene: 108797484

Following gene: 108797479

Centisome position: 9.78

GC content: 67.39

Gene sequence:

>696_bases
ATGACGACCACCCATCTGGCCCTCATGCCCGATTTCCTGGATCCGCTGGTTTTGCTCGGCTATTTCGGCGGCTGGGCGCT
GGTGGGCCTGCTGGTCGTGATCTTCGTCGAATCCGGCGTGCTGTTCCCCGTCCTGCCCGGTGACTCGCTGCTGTTCGTGG
CGGGCATGTTGGCCGCAGGGACGGCGGCCGTGGCCGAGAGCGGCGGTGAGCCGATCAACTTCCACCTGTGGCAGTTGCTG
GTGTTCATCCCCATCGCGGCGATCCTGGGCGGGCAGGTCGGGTACTGGATCGGCCGCAGCGTCGGCACCGCGATGTTCAA
ACCGAACGCCCGCATCCTCAAACAGCGCTACCTCGAGGAGGCGCACCTGTTCTTCGAGGAACGCGGACCGTTCGCGATCG
TCATCGCGCGGTTCGTGCCCATCGTCCGCACGCTGGCGCCGCTGACCGCGGGCGCCGCCCGGATGAGCTACCCGGTGTTC
GCGCTGTTCAACATCCTCGGCGCGGTGGTCTGGGGGGTGGGGCTGACGCTGCTCGGCTACTGGCTCGGCAGGTTCGAGAT
GGTGCAGAAACTCCTCGAGCCGATCGTCATCGCGATCGTGATCGTCTCCGTCGCCCCGATGCTGCTCGAGTGGTACAAAC
GCCGCAAGGCCGCCAAGCGCGCCGGGATCGCCGCGCCGCCGATCGAGCCGGCCTAG

Upstream 100 bases:

>100_bases
TGTGAGTGGCCATGTTTTGGACCTTAATGACGAGAACACGGCGCCGCCGCCCGAATGCGCACCGGCTAGCTGCAATTTTC
GGCCGGTATCTTGGGTACCC

Downstream 100 bases:

>100_bases
CTGGCCAGCTCGGTCAGGATCGTCGCCGTCGGCTTCTCGGCGGCGTGGCGGTAGCCGGTGCCGGCCCACAGGTGGACCAG
GTCGGCGTCGCCGCCGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTTTHLALMPDFLDPLVLLGYFGGWALVGLLVVIFVESGVLFPVLPGDSLLFVAGMLAAGTAAVAESGGEPINFHLWQLL
VFIPIAAILGGQVGYWIGRSVGTAMFKPNARILKQRYLEEAHLFFEERGPFAIVIARFVPIVRTLAPLTAGAARMSYPVF
ALFNILGAVVWGVGLTLLGYWLGRFEMVQKLLEPIVIAIVIVSVAPMLLEWYKRRKAAKRAGIAAPPIEPA

Sequences:

>Translated_231_residues
MTTTHLALMPDFLDPLVLLGYFGGWALVGLLVVIFVESGVLFPVLPGDSLLFVAGMLAAGTAAVAESGGEPINFHLWQLL
VFIPIAAILGGQVGYWIGRSVGTAMFKPNARILKQRYLEEAHLFFEERGPFAIVIARFVPIVRTLAPLTAGAARMSYPVF
ALFNILGAVVWGVGLTLLGYWLGRFEMVQKLLEPIVIAIVIVSVAPMLLEWYKRRKAAKRAGIAAPPIEPA
>Mature_230_residues
TTTHLALMPDFLDPLVLLGYFGGWALVGLLVVIFVESGVLFPVLPGDSLLFVAGMLAAGTAAVAESGGEPINFHLWQLLV
FIPIAAILGGQVGYWIGRSVGTAMFKPNARILKQRYLEEAHLFFEERGPFAIVIARFVPIVRTLAPLTAGAARMSYPVFA
LFNILGAVVWGVGLTLLGYWLGRFEMVQKLLEPIVIAIVIVSVAPMLLEWYKRRKAAKRAGIAAPPIEPA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=195, Percent_Identity=42.0512820512821, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1789481, Length=157, Percent_Identity=36.9426751592357, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25055; Mature: 24924

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTHLALMPDFLDPLVLLGYFGGWALVGLLVVIFVESGVLFPVLPGDSLLFVAGMLAAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
TAAVAESGGEPINFHLWQLLVFIPIAAILGGQVGYWIGRSVGTAMFKPNARILKQRYLEE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AHLFFEERGPFAIVIARFVPIVRTLAPLTAGAARMSYPVFALFNILGAVVWGVGLTLLGY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGRFEMVQKLLEPIVIAIVIVSVAPMLLEWYKRRKAAKRAGIAAPPIEPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TTTHLALMPDFLDPLVLLGYFGGWALVGLLVVIFVESGVLFPVLPGDSLLFVAGMLAAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
TAAVAESGGEPINFHLWQLLVFIPIAAILGGQVGYWIGRSVGTAMFKPNARILKQRYLEE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AHLFFEERGPFAIVIARFVPIVRTLAPLTAGAARMSYPVFALFNILGAVVWGVGLTLLGY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGRFEMVQKLLEPIVIAIVIVSVAPMLLEWYKRRKAAKRAGIAAPPIEPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]