Definition | Mycobacterium sp. MCS chromosome, complete genome. |
---|---|
Accession | NC_008146 |
Length | 5,705,448 |
Click here to switch to the map view.
The map label for this gene is 108797420
Identifier: 108797420
GI number: 108797420
Start: 487612
End: 488886
Strand: Reverse
Name: 108797420
Synonym: Mmcs_0440
Alternate gene names: NA
Gene position: 488886-487612 (Counterclockwise)
Preceding gene: 108797421
Following gene: 108797419
Centisome position: 8.57
GC content: 71.22
Gene sequence:
>1275_bases GTGTCGCACTCCCACCCGCATTCCCACTCGCTGAGCGGGCCGTCCCCGCTCGGCCCGTTGGCCGCCAGGATCGTCGTCGG GTTGCTGGCGCTCATCGGTGTCGCGGTGGCGATCGGCGCGGTGCTGCTGTGGCCGAGCCAGCAGAAGGCCGACATCCCGC TGCCCTTCCAGAACGCCGAGGGCGGTGCGGTGACGACGGAGGCCGGGCAGGTGCGCGCCACCAGCCTGGCGCCGTGCGGC AGTCCGTCGGCGGGTCAGGTGCTCACCGCCGATCCGGTCCCGACGCCGGCCGACGGGTCCCAGTGCGTACAGGTGCTCGT CGCGATCGACTCGGGGCCCAACAAGGGCGCCAACACGCTTCTGGAGTTCAGCGGCGGACCCGGCCAGCCACAGTTGGCCG CGGGGGACGACATCCGGCTCAGCCGTCAGGTGAGCCCGGGCGGCGCCACCAGCTACACGTTCTACGACTACGCGCGGGGA TGGCCGCTGGCCCTGCTGGCCGCCGCCTTCGCCGTCGTGGTCGTGGCGGTCGCGCGGTGGCGGGGTCTGCGCGCGCTGGT GGGCATCGTGGTCGCGTTCGCGGTGCTGGTGGTGTTCCTGCTGCCCGCCCTGCGCGACGGCGCATCGGCCGTCCCGGTCG CGCTGGTGGCGTCCGCGGTGATCCTCTATGCCGTCATCTATCTGGCCCACGGTGTCAGCCTGCGCACCAGCGCCGCGCTG CTCGGCACGCTGACGTCGCTGCTGCTGGCCGCCGTGCTGTCCTGGGGCGCCATCGAAATCGCCCATCTCACCGGGCTTTC GGAGGACCAGAACAACGAGGTCGCCGCCTACCTGGGCAACGTGTCGATCACCGGTCTGCTGCTGGCCGGGTTCATCATCG GCTCACTCGGCGTGCTCAACGACGTGACGGTGACCCAGGCGTCGACGGCGTTCGAACTGGCCGAACTGGAGGGCAGTTCG CGGCGGGCGGTCTTCGTCGGCGCGATGCGGGTGGGCCGTGACCACATCGCGAGCACGGTGTACACGCTGGTGCTCGCCTA TGCCGGTAGCGCGTTACCGCTGCTGCTGTTGTTCAGCGTCGCCAACCGCTCGCTGGTCGACGTGCTGACCAGTGAGAGCG TGGCCATCGAGGTCGCGCGCTCGGCCGTCGGCGGTATCGCGCTGGCACTGTCGGTCCCGTTGACGACGGGGATCGCCGCT GTCCTGGCGACACCGCGGGCGGACAACCACCCGCGACGTTTCGCGGTCAGGCCCTGGGGTATCCGCCCGCCATGA
Upstream 100 bases:
>100_bases ACCGGATCACCTGCGCATCGTCACGCTGCCGTGGGCTCGTGACCTGGCCAACGCCATCGAGCGTCTCGGCAACTTCCTGG TCAGCTACCGGCAGTAGCGA
Downstream 100 bases:
>100_bases CCCAGCCCACCGGTCATCGTGAAGTGACCCTCGAGGTCGACGGCCGGCCACACACACTGCACCTCGACAACCGCGTCACC CTTCTCGACGCGCTGCGCGA
Product: YibE/F-like protein
Products: NA
Alternate protein names: YibE/F-Like Protein; Integral Membrane Protein; Multitransmembrane Protein; YibE/F-Like Family Protein
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MSHSHPHSHSLSGPSPLGPLAARIVVGLLALIGVAVAIGAVLLWPSQQKADIPLPFQNAEGGAVTTEAGQVRATSLAPCG SPSAGQVLTADPVPTPADGSQCVQVLVAIDSGPNKGANTLLEFSGGPGQPQLAAGDDIRLSRQVSPGGATSYTFYDYARG WPLALLAAAFAVVVVAVARWRGLRALVGIVVAFAVLVVFLLPALRDGASAVPVALVASAVILYAVIYLAHGVSLRTSAAL LGTLTSLLLAAVLSWGAIEIAHLTGLSEDQNNEVAAYLGNVSITGLLLAGFIIGSLGVLNDVTVTQASTAFELAELEGSS RRAVFVGAMRVGRDHIASTVYTLVLAYAGSALPLLLLFSVANRSLVDVLTSESVAIEVARSAVGGIALALSVPLTTGIAA VLATPRADNHPRRFAVRPWGIRPP
Sequences:
>Translated_424_residues MSHSHPHSHSLSGPSPLGPLAARIVVGLLALIGVAVAIGAVLLWPSQQKADIPLPFQNAEGGAVTTEAGQVRATSLAPCG SPSAGQVLTADPVPTPADGSQCVQVLVAIDSGPNKGANTLLEFSGGPGQPQLAAGDDIRLSRQVSPGGATSYTFYDYARG WPLALLAAAFAVVVVAVARWRGLRALVGIVVAFAVLVVFLLPALRDGASAVPVALVASAVILYAVIYLAHGVSLRTSAAL LGTLTSLLLAAVLSWGAIEIAHLTGLSEDQNNEVAAYLGNVSITGLLLAGFIIGSLGVLNDVTVTQASTAFELAELEGSS RRAVFVGAMRVGRDHIASTVYTLVLAYAGSALPLLLLFSVANRSLVDVLTSESVAIEVARSAVGGIALALSVPLTTGIAA VLATPRADNHPRRFAVRPWGIRPP >Mature_423_residues SHSHPHSHSLSGPSPLGPLAARIVVGLLALIGVAVAIGAVLLWPSQQKADIPLPFQNAEGGAVTTEAGQVRATSLAPCGS PSAGQVLTADPVPTPADGSQCVQVLVAIDSGPNKGANTLLEFSGGPGQPQLAAGDDIRLSRQVSPGGATSYTFYDYARGW PLALLAAAFAVVVVAVARWRGLRALVGIVVAFAVLVVFLLPALRDGASAVPVALVASAVILYAVIYLAHGVSLRTSAALL GTLTSLLLAAVLSWGAIEIAHLTGLSEDQNNEVAAYLGNVSITGLLLAGFIIGSLGVLNDVTVTQASTAFELAELEGSSR RAVFVGAMRVGRDHIASTVYTLVLAYAGSALPLLLLFSVANRSLVDVLTSESVAIEVARSAVGGIALALSVPLTTGIAAV LATPRADNHPRRFAVRPWGIRPP
Specific function: Unknown
COG id: COG5438
COG function: function code S; Predicted multitransmembrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43240; Mature: 43108
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSHPHSHSLSGPSPLGPLAARIVVGLLALIGVAVAIGAVLLWPSQQKADIPLPFQNAE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCC GGAVTTEAGQVRATSLAPCGSPSAGQVLTADPVPTPADGSQCVQVLVAIDSGPNKGANTL CCEEECCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHEECCCCCCCCCCE LEFSGGPGQPQLAAGDDIRLSRQVSPGGATSYTFYDYARGWPLALLAAAFAVVVVAVARW EEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHH RGLRALVGIVVAFAVLVVFLLPALRDGASAVPVALVASAVILYAVIYLAHGVSLRTSAAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LGTLTSLLLAAVLSWGAIEIAHLTGLSEDQNNEVAAYLGNVSITGLLLAGFIIGSLGVLN HHHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC DVTVTQASTAFELAELEGSSRRAVFVGAMRVGRDHIASTVYTLVLAYAGSALPLLLLFSV CCEEECCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH ANRSLVDVLTSESVAIEVARSAVGGIALALSVPLTTGIAAVLATPRADNHPRRFAVRPWG HCCHHHHHHHCCHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCCCCCEEEECCCC IRPP CCCC >Mature Secondary Structure SHSHPHSHSLSGPSPLGPLAARIVVGLLALIGVAVAIGAVLLWPSQQKADIPLPFQNAE CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCC GGAVTTEAGQVRATSLAPCGSPSAGQVLTADPVPTPADGSQCVQVLVAIDSGPNKGANTL CCEEECCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHEECCCCCCCCCCE LEFSGGPGQPQLAAGDDIRLSRQVSPGGATSYTFYDYARGWPLALLAAAFAVVVVAVARW EEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHH RGLRALVGIVVAFAVLVVFLLPALRDGASAVPVALVASAVILYAVIYLAHGVSLRTSAAL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LGTLTSLLLAAVLSWGAIEIAHLTGLSEDQNNEVAAYLGNVSITGLLLAGFIIGSLGVLN HHHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC DVTVTQASTAFELAELEGSSRRAVFVGAMRVGRDHIASTVYTLVLAYAGSALPLLLLFSV CCEEECCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH ANRSLVDVLTSESVAIEVARSAVGGIALALSVPLTTGIAAVLATPRADNHPRRFAVRPWG HCCHHHHHHHCCHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCCCCCEEEECCCC IRPP CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA