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The map label for this gene is ycdM [C]

Identifier: 108797309

GI number: 108797309

Start: 366905

End: 367825

Strand: Reverse

Name: ycdM [C]

Synonym: Mmcs_0329

Alternate gene names: 108797309

Gene position: 367825-366905 (Counterclockwise)

Preceding gene: 108797310

Following gene: 108797306

Centisome position: 6.45

GC content: 65.36

Gene sequence:

>921_bases
GTGAAACTCGTCTTCAACCTGCCCCACATGCTGCGGCTCAAGGCGATGATGCAGCCGTGGGAGGCCGCGGTCACCGGGGC
CGATCAGACCCGGATGGCCAAGTGCGCCGACGCGTGGGGCTACGACATGATCGCCGTTCCCGAACATTTCGTGATCCCCA
ACGACCACGTCGAACTGTCCGGTCCGCACTATCTGCAATCCACGGTGGCGCAGGCCTACCTCGCCGGTGCGACCGAACGC
ATCCGGCTCAACTCCTGCATCACCGTGCTGCCACTGCAGCATCCGATCGTCCTCGCCAAGGCCCTGGCCACCGCGGACTG
GATGAGCGGCGGCAGGATGATGGTGACGTTCGGGGTGGGTTGGCTGGAAAAGGAATTCGAGCTACTCGGGGTGCCATTTC
ACGAACGCGGCCGGATGGCGGACGAATACCTGGCCGCGATCGTCGAACTGTGGACGAGTGACTCGCCGAGCTTCCACGGT
AAGTACGTATCGTTCGACGACATCGCCTTCGAGCCCAAGCCGGTGCAGAAACCGCATCTGCCGGTCTGGATCGGCGGTGA
CGCCGATGCGGCGCTGCGCCGGGCGGCGAAGTTCGCATCGGGTTGGTGGTCGTTTCTCACCCCGCCCGAGAAGATCGCCG
AACGTCTCGAGTTCATCAAATCCCAACCCGGGTACGACGGTCGGCCCTTCGACGTCGTCCACGGACTGGGCACCACCCGC
GTCGGTGAAGGGCACGTCGCCCGTGACGACCCCCACGGGCGCCCGGGGATGAACGCGGCCGAGATCGTGGACCGCCTCTG
CTGGCTCGGCGAACAGGGCGTGACCGTCAGCGCCGTCCCGTTACCTCCGGTCAGCGGCGTCGACGAATACCTCGACTACG
CCCAGTGGGTGGTCGAGGAGATCAAACCCCAAGTGCCCTAG

Upstream 100 bases:

>100_bases
CTCGCCTCCGACGAATCCCGTTACGTCACCGGGCTACCCGTCACCGTCGACGCCGGTAGCATGCTCAAGTAGCGCGTGCC
GCCGGACACAGGAGTCCCGT

Downstream 100 bases:

>100_bases
CGGGTGTCACAGCGCGAGCGAGAACCCGCCGCCCCTCGAGCGTGATCTCCGCCGTCAACGTCAATCTCCTTCTGGGGCGT
GCGCCCGCGTCACCATCACC

Product: luciferase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKLVFNLPHMLRLKAMMQPWEAAVTGADQTRMAKCADAWGYDMIAVPEHFVIPNDHVELSGPHYLQSTVAQAYLAGATER
IRLNSCITVLPLQHPIVLAKALATADWMSGGRMMVTFGVGWLEKEFELLGVPFHERGRMADEYLAAIVELWTSDSPSFHG
KYVSFDDIAFEPKPVQKPHLPVWIGGDADAALRRAAKFASGWWSFLTPPEKIAERLEFIKSQPGYDGRPFDVVHGLGTTR
VGEGHVARDDPHGRPGMNAAEIVDRLCWLGEQGVTVSAVPLPPVSGVDEYLDYAQWVVEEIKPQVP

Sequences:

>Translated_306_residues
MKLVFNLPHMLRLKAMMQPWEAAVTGADQTRMAKCADAWGYDMIAVPEHFVIPNDHVELSGPHYLQSTVAQAYLAGATER
IRLNSCITVLPLQHPIVLAKALATADWMSGGRMMVTFGVGWLEKEFELLGVPFHERGRMADEYLAAIVELWTSDSPSFHG
KYVSFDDIAFEPKPVQKPHLPVWIGGDADAALRRAAKFASGWWSFLTPPEKIAERLEFIKSQPGYDGRPFDVVHGLGTTR
VGEGHVARDDPHGRPGMNAAEIVDRLCWLGEQGVTVSAVPLPPVSGVDEYLDYAQWVVEEIKPQVP
>Mature_306_residues
MKLVFNLPHMLRLKAMMQPWEAAVTGADQTRMAKCADAWGYDMIAVPEHFVIPNDHVELSGPHYLQSTVAQAYLAGATER
IRLNSCITVLPLQHPIVLAKALATADWMSGGRMMVTFGVGWLEKEFELLGVPFHERGRMADEYLAAIVELWTSDSPSFHG
KYVSFDDIAFEPKPVQKPHLPVWIGGDADAALRRAAKFASGWWSFLTPPEKIAERLEFIKSQPGYDGRPFDVVHGLGTTR
VGEGHVARDDPHGRPGMNAAEIVDRLCWLGEQGVTVSAVPLPPVSGVDEYLDYAQWVVEEIKPQVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=148, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 33938; Mature: 33938

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVFNLPHMLRLKAMMQPWEAAVTGADQTRMAKCADAWGYDMIAVPEHFVIPNDHVELS
CEEEECCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCEEECCCCCEECC
GPHYLQSTVAQAYLAGATERIRLNSCITVLPLQHPIVLAKALATADWMSGGRMMVTFGVG
CCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCC
WLEKEFELLGVPFHERGRMADEYLAAIVELWTSDSPSFHGKYVSFDDIAFEPKPVQKPHL
HHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCC
PVWIGGDADAALRRAAKFASGWWSFLTPPEKIAERLEFIKSQPGYDGRPFDVVHGLGTTR
CEEECCCHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCC
VGEGHVARDDPHGRPGMNAAEIVDRLCWLGEQGVTVSAVPLPPVSGVDEYLDYAQWVVEE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
IKPQVP
HCCCCC
>Mature Secondary Structure
MKLVFNLPHMLRLKAMMQPWEAAVTGADQTRMAKCADAWGYDMIAVPEHFVIPNDHVELS
CEEEECCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCEEECCCCCEECC
GPHYLQSTVAQAYLAGATERIRLNSCITVLPLQHPIVLAKALATADWMSGGRMMVTFGVG
CCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCC
WLEKEFELLGVPFHERGRMADEYLAAIVELWTSDSPSFHGKYVSFDDIAFEPKPVQKPHL
HHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCC
PVWIGGDADAALRRAAKFASGWWSFLTPPEKIAERLEFIKSQPGYDGRPFDVVHGLGTTR
CEEECCCHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCC
VGEGHVARDDPHGRPGMNAAEIVDRLCWLGEQGVTVSAVPLPPVSGVDEYLDYAQWVVEE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
IKPQVP
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]