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The map label for this gene is ybgJ [H]

Identifier: 108797248

GI number: 108797248

Start: 308042

End: 308707

Strand: Reverse

Name: ybgJ [H]

Synonym: Mmcs_0268

Alternate gene names: 108797248

Gene position: 308707-308042 (Counterclockwise)

Preceding gene: 108797249

Following gene: 108797247

Centisome position: 5.41

GC content: 71.62

Gene sequence:

>666_bases
ATGACCGCAGTACCGGATGTGATGGAGCCGATGGTCCTGGGCACAGTGCTCGACTACGGCGACCGCGCGCTGCTTCTCCA
GTTCGACGACACCGCTCAGGTACTGGCGTGGACCGATGCGGTCCGCGCCGCGGGCCTACCCGGCGTCGTCGACATCGTGC
CGGGTTCGCGCACCGTGCTCGTCAAACTCGACGGCCCGCGATATCAGGCGCCGACCCGGCAGCGGCTGGCCGCCCTGCGC
ATCGATCGGGGCGCCGTCGCGGAATCCGCGAGCCCGCCGGACCGCGCCGACGCCGTCATCGACGTCGTCTACGACGGCGC
GGACCTCGCCGACGTCGCGCGGCTGACCGGGATGGATACCGACCAGGTCGTGGCCGCCCACACCGGCACGCTGTGGCGGG
TCGGATTCGGGGGCTTCGCACCGGGTTTCGCCTACCTCGTCGGCGGCGACGAGCGGTTGCACGTCCCGCGTCGCGCGGAA
CCCCGCACCAAGGTGCCTGCCGGTTCCGTCGGGTTGGCCGGTGAGTTCAGCGGGGTGTACCCGCGCGAGTCGCCCGGCGG
GTGGCAGTTGATCGGCCACACCGACGCCGTGCTGTGGGACGTGGACCGGGAGAACCCGGCGCTGCTCACCCCGGGTATGT
GGGTCGAGTTCCGCGTCGCGGAATAG

Upstream 100 bases:

>100_bases
AACCGACCTACGAGCCCGCGGTCTGAGCCTTCTTTAAAACACCTCTGGCAACCCTTCTCAGGGAGCGGACGCCGGACGTT
ACCCAGCGGTAGCTTTGGGT

Downstream 100 bases:

>100_bases
GCAACGCGAAATGAGCACGGTCGGATGAGGAGCAGACGATGACGACTCTGGAGATTCTGAACACCGGGCCGCTGGCACTG
GTCGAAGACCTCGGCCGCCC

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTAVPDVMEPMVLGTVLDYGDRALLLQFDDTAQVLAWTDAVRAAGLPGVVDIVPGSRTVLVKLDGPRYQAPTRQRLAALR
IDRGAVAESASPPDRADAVIDVVYDGADLADVARLTGMDTDQVVAAHTGTLWRVGFGGFAPGFAYLVGGDERLHVPRRAE
PRTKVPAGSVGLAGEFSGVYPRESPGGWQLIGHTDAVLWDVDRENPALLTPGMWVEFRVAE

Sequences:

>Translated_221_residues
MTAVPDVMEPMVLGTVLDYGDRALLLQFDDTAQVLAWTDAVRAAGLPGVVDIVPGSRTVLVKLDGPRYQAPTRQRLAALR
IDRGAVAESASPPDRADAVIDVVYDGADLADVARLTGMDTDQVVAAHTGTLWRVGFGGFAPGFAYLVGGDERLHVPRRAE
PRTKVPAGSVGLAGEFSGVYPRESPGGWQLIGHTDAVLWDVDRENPALLTPGMWVEFRVAE
>Mature_220_residues
TAVPDVMEPMVLGTVLDYGDRALLLQFDDTAQVLAWTDAVRAAGLPGVVDIVPGSRTVLVKLDGPRYQAPTRQRLAALRI
DRGAVAESASPPDRADAVIDVVYDGADLADVARLTGMDTDQVVAAHTGTLWRVGFGGFAPGFAYLVGGDERLHVPRRAEP
RTKVPAGSVGLAGEFSGVYPRESPGGWQLIGHTDAVLWDVDRENPALLTPGMWVEFRVAE

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=205, Percent_Identity=42.9268292682927, Blast_Score=137, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23600; Mature: 23469

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVPDVMEPMVLGTVLDYGDRALLLQFDDTAQVLAWTDAVRAAGLPGVVDIVPGSRTVL
CCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHCCCCCEEEECCCCCEEE
VKLDGPRYQAPTRQRLAALRIDRGAVAESASPPDRADAVIDVVYDGADLADVARLTGMDT
EEECCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCC
DQVVAAHTGTLWRVGFGGFAPGFAYLVGGDERLHVPRRAEPRTKVPAGSVGLAGEFSGVY
HHEEEECCCEEEEECCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PRESPGGWQLIGHTDAVLWDVDRENPALLTPGMWVEFRVAE
CCCCCCCEEEEECCCEEEEEECCCCCEEECCCCEEEEEECC
>Mature Secondary Structure 
TAVPDVMEPMVLGTVLDYGDRALLLQFDDTAQVLAWTDAVRAAGLPGVVDIVPGSRTVL
CCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHHHHCCCCCEEEECCCCCEEE
VKLDGPRYQAPTRQRLAALRIDRGAVAESASPPDRADAVIDVVYDGADLADVARLTGMDT
EEECCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCC
DQVVAAHTGTLWRVGFGGFAPGFAYLVGGDERLHVPRRAEPRTKVPAGSVGLAGEFSGVY
HHEEEECCCEEEEECCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PRESPGGWQLIGHTDAVLWDVDRENPALLTPGMWVEFRVAE
CCCCCCCEEEEECCCEEEEEECCCCCEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]