Click here to switch to the map view.

The map label for this gene is ybgK [H]

Identifier: 108797247

GI number: 108797247

Start: 307125

End: 308003

Strand: Reverse

Name: ybgK [H]

Synonym: Mmcs_0267

Alternate gene names: 108797247

Gene position: 308003-307125 (Counterclockwise)

Preceding gene: 108797248

Following gene: 108797246

Centisome position: 5.4

GC content: 70.08

Gene sequence:

>879_bases
ATGACGACTCTGGAGATTCTGAACACCGGGCCGCTGGCACTGGTCGAAGACCTCGGCCGCCCCGGGCTGGCACACATGGG
CGTCACCCGATCGGGTGCCGCGGACCGCCGCGCGCACGCCCTGGCCAACCGCCTGGTCGCCAACCCCGGTGATCGCGCGA
CCGTCGAGGTGATGTTCGGCGGGCTCACCGCCCGGGTCCGCGGAGGCGACGTCACCGTCGCCGTCACCGGCGCCGACACC
GACCCCGCCGTCAACGGAAAACCGTTCGGCACCAACAGCATCCACTACGCGCACGACGGCGACGTGATCTCGCTGGGGAT
GGCGCAGGCCGGGCTGCGCAGCTACCTCGCAGTGCGCGGCGGTATCGACGTGGCGCCGGTGCTCGGCTCCCGCAGCTACG
ACGTCATGTCCGCCATCGGACCGCAACCGCTCAAACCCGGTGACGTGCTGCCCGTCGGCGAGCACACCGAGGACTTCCCC
GAACTCGATCAGGCGCCGGTGGCGGCGATCGACGACGACGTGCTCGAACTCATGGTGGTGCCCGGACCGCACGACGACTG
GTTTGTCGACCCCGAATTCCTGGTACGCACCAACTGGCAGGTCACCAACCGCAGCGACCGCGTCGGTATGCGGCTGGTCG
GCATGCCCCTGGACTACCGGTGGCCCGACCGGCAACTGCCCAGCGAGGGAGCCACCCGCGGGGCGATTCAGGTGCCGCCC
AACGGTTTACCGGTCATCCTCGGCCCGGACCATCCCGTCACCGGCGGGTACCCGGTGATCGCTGTGGTGGTCGACGAGGA
CATCGACAAGGCCTCGCAGGCCCGCCCCGGACAGACCGTGCGGCTGCACTGGTCGCGGCCGCGCAAACCGTTCGCATGA

Upstream 100 bases:

>100_bases
ACCGGGAGAACCCGGCGCTGCTCACCCCGGGTATGTGGGTCGAGTTCCGCGTCGCGGAATAGGCAACGCGAAATGAGCAC
GGTCGGATGAGGAGCAGACG

Downstream 100 bases:

>100_bases
GGAGCTGTTGCAGAATAGCCAGGTGAATCGGCTGTTCCGCCGCGGAGGGTCCACGGCCACACCTCCGCCGGCGGCTGCGC
CGGCCTGGTTCGCCGCGGCC

Product: allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTTLEILNTGPLALVEDLGRPGLAHMGVTRSGAADRRAHALANRLVANPGDRATVEVMFGGLTARVRGGDVTVAVTGADT
DPAVNGKPFGTNSIHYAHDGDVISLGMAQAGLRSYLAVRGGIDVAPVLGSRSYDVMSAIGPQPLKPGDVLPVGEHTEDFP
ELDQAPVAAIDDDVLELMVVPGPHDDWFVDPEFLVRTNWQVTNRSDRVGMRLVGMPLDYRWPDRQLPSEGATRGAIQVPP
NGLPVILGPDHPVTGGYPVIAVVVDEDIDKASQARPGQTVRLHWSRPRKPFA

Sequences:

>Translated_292_residues
MTTLEILNTGPLALVEDLGRPGLAHMGVTRSGAADRRAHALANRLVANPGDRATVEVMFGGLTARVRGGDVTVAVTGADT
DPAVNGKPFGTNSIHYAHDGDVISLGMAQAGLRSYLAVRGGIDVAPVLGSRSYDVMSAIGPQPLKPGDVLPVGEHTEDFP
ELDQAPVAAIDDDVLELMVVPGPHDDWFVDPEFLVRTNWQVTNRSDRVGMRLVGMPLDYRWPDRQLPSEGATRGAIQVPP
NGLPVILGPDHPVTGGYPVIAVVVDEDIDKASQARPGQTVRLHWSRPRKPFA
>Mature_291_residues
TTLEILNTGPLALVEDLGRPGLAHMGVTRSGAADRRAHALANRLVANPGDRATVEVMFGGLTARVRGGDVTVAVTGADTD
PAVNGKPFGTNSIHYAHDGDVISLGMAQAGLRSYLAVRGGIDVAPVLGSRSYDVMSAIGPQPLKPGDVLPVGEHTEDFPE
LDQAPVAAIDDDVLELMVVPGPHDDWFVDPEFLVRTNWQVTNRSDRVGMRLVGMPLDYRWPDRQLPSEGATRGAIQVPPN
GLPVILGPDHPVTGGYPVIAVVVDEDIDKASQARPGQTVRLHWSRPRKPFA

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=284, Percent_Identity=35.5633802816901, Blast_Score=142, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6319685, Length=307, Percent_Identity=29.9674267100977, Blast_Score=92, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 31124; Mature: 30992

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLEILNTGPLALVEDLGRPGLAHMGVTRSGAADRRAHALANRLVANPGDRATVEVMFG
CCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC
GLTARVRGGDVTVAVTGADTDPAVNGKPFGTNSIHYAHDGDVISLGMAQAGLRSYLAVRG
CEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHHHCC
GIDVAPVLGSRSYDVMSAIGPQPLKPGDVLPVGEHTEDFPELDQAPVAAIDDDVLELMVV
CCEEEEECCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEC
PGPHDDWFVDPEFLVRTNWQVTNRSDRVGMRLVGMPLDYRWPDRQLPSEGATRGAIQVPP
CCCCCCCEECCCEEEEECEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECC
NGLPVILGPDHPVTGGYPVIAVVVDEDIDKASQARPGQTVRLHWSRPRKPFA
CCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
TTLEILNTGPLALVEDLGRPGLAHMGVTRSGAADRRAHALANRLVANPGDRATVEVMFG
CEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC
GLTARVRGGDVTVAVTGADTDPAVNGKPFGTNSIHYAHDGDVISLGMAQAGLRSYLAVRG
CEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHHHHHCC
GIDVAPVLGSRSYDVMSAIGPQPLKPGDVLPVGEHTEDFPELDQAPVAAIDDDVLELMVV
CCEEEEECCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEC
PGPHDDWFVDPEFLVRTNWQVTNRSDRVGMRLVGMPLDYRWPDRQLPSEGATRGAIQVPP
CCCCCCCEECCCEEEEECEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECC
NGLPVILGPDHPVTGGYPVIAVVVDEDIDKASQARPGQTVRLHWSRPRKPFA
CCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]