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The map label for this gene is yvoA [H]

Identifier: 108797169

GI number: 108797169

Start: 210311

End: 211093

Strand: Reverse

Name: yvoA [H]

Synonym: Mmcs_0189

Alternate gene names: 108797169

Gene position: 211093-210311 (Counterclockwise)

Preceding gene: 108797170

Following gene: 108797167

Centisome position: 3.7

GC content: 69.09

Gene sequence:

>783_bases
GTGCCGACGCACAGCGAGGAGTTGCGGCGCCGGATCGTGGCCGACATCAACGCCGGCATCCCCGGTGCGAAACTGGGCAG
CGAACGCGACCTCGCCGAGCGGTACGGCACCAGCCGGTCGAGCCTGCGGCAGGTGCTGGCCGCCCTCGAAGAGGCCGGCA
TGGTGCACCGGGTGATCGGGCGTGCAGGCGGGATCTTCATCAGCCACGGTCAGGTCGAGCGCAACCTCGCCGATGTCGTC
GGCGTACCGGCGTTCCTGGCCAATCAGGGATACGTCGCCGGCACCCGGGTGCTGTCGACGAAGATCGCCCCGGTCGACGA
CGCCACCCAGGCCGCGTTGCGGCTGCAGCCCACCGATTTCGTGGTGGAGATCCAGCGGCTCCGCCTGGCCGACGGATCGC
CGATCTCGCTGGAACTGGCCCAGTTTCCCGCCGATGCGTTCCCGGGGCTGCTCGAACAGCAACTCGGCGGATCCATCTAC
GAGGTGCTCGAGAACCGCTACGGCCTGGTGCCGGGGCGGGCCGACGAGCGCATCGAGGCGGTCAACGCCACCACCACCGA
AGCGTCGCTGCTCGGGGTGAAACCGAAATCGGCACTGCTGCTGATCACCCGGGTCACCTACGACAGCGACGGGACGCCGT
GCGAGTTCTCCCGCGACCTGTTCCGCGGCGACCGCATCTACCTCGCCGTCACCGCACAGGGCAGGGGCATCGGCAAGGGG
CTCGGCAGCGGACCCGACACCAACACGGCGTCGGTCAAACTGCAGAGCCAGCTCGCCGTCTAA

Upstream 100 bases:

>100_bases
AGGCGATCGCCGAGTTGTAACCGCACCGGCCGACGGGGGGCCGCTAGAATTGGTTCTACCAATTCGTTTCGATATCACCC
CGACATTGGGAGGTCAGCCG

Downstream 100 bases:

>100_bases
CCCTGACCGCGCGCCTTCATCAGCTGTTCGGAGACCATCGCGAGCACCGGCCGCGGCGCGATCCGGTAGCCGAGCGCCAG
GATGCGGTTGTGCAGACCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPTHSEELRRRIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHGQVERNLADVV
GVPAFLANQGYVAGTRVLSTKIAPVDDATQAALRLQPTDFVVEIQRLRLADGSPISLELAQFPADAFPGLLEQQLGGSIY
EVLENRYGLVPGRADERIEAVNATTTEASLLGVKPKSALLLITRVTYDSDGTPCEFSRDLFRGDRIYLAVTAQGRGIGKG
LGSGPDTNTASVKLQSQLAV

Sequences:

>Translated_260_residues
MPTHSEELRRRIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHGQVERNLADVV
GVPAFLANQGYVAGTRVLSTKIAPVDDATQAALRLQPTDFVVEIQRLRLADGSPISLELAQFPADAFPGLLEQQLGGSIY
EVLENRYGLVPGRADERIEAVNATTTEASLLGVKPKSALLLITRVTYDSDGTPCEFSRDLFRGDRIYLAVTAQGRGIGKG
LGSGPDTNTASVKLQSQLAV
>Mature_259_residues
PTHSEELRRRIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHGQVERNLADVVG
VPAFLANQGYVAGTRVLSTKIAPVDDATQAALRLQPTDFVVEIQRLRLADGSPISLELAQFPADAFPGLLEQQLGGSIYE
VLENRYGLVPGRADERIEAVNATTTEASLLGVKPKSALLLITRVTYDSDGTPCEFSRDLFRGDRIYLAVTAQGRGIGKGL
GSGPDTNTASVKLQSQLAV

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=216, Percent_Identity=26.3888888888889, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1790118, Length=222, Percent_Identity=30.1801801801802, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87082252, Length=229, Percent_Identity=24.0174672489083, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27734; Mature: 27603

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTHSEELRRRIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIG
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHH
RAGGIFISHGQVERNLADVVGVPAFLANQGYVAGTRVLSTKIAPVDDATQAALRLQPTDF
CCCCEEEECCHHHHHHHHHHCCHHHHHCCCCEEHHHEEEEECCCCCCHHHHHEEECCCHH
VVEIQRLRLADGSPISLELAQFPADAFPGLLEQQLGGSIYEVLENRYGLVPGRADERIEA
HHHHHHHHCCCCCCCEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHH
VNATTTEASLLGVKPKSALLLITRVTYDSDGTPCEFSRDLFRGDRIYLAVTAQGRGIGKG
HCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCC
LGSGPDTNTASVKLQSQLAV
CCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
PTHSEELRRRIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIG
CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHH
RAGGIFISHGQVERNLADVVGVPAFLANQGYVAGTRVLSTKIAPVDDATQAALRLQPTDF
CCCCEEEECCHHHHHHHHHHCCHHHHHCCCCEEHHHEEEEECCCCCCHHHHHEEECCCHH
VVEIQRLRLADGSPISLELAQFPADAFPGLLEQQLGGSIYEVLENRYGLVPGRADERIEA
HHHHHHHHCCCCCCCEEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHH
VNATTTEASLLGVKPKSALLLITRVTYDSDGTPCEFSRDLFRGDRIYLAVTAQGRGIGKG
HCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCC
LGSGPDTNTASVKLQSQLAV
CCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]