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The map label for this gene is ydeA [C]

Identifier: 108797130

GI number: 108797130

Start: 165208

End: 166410

Strand: Direct

Name: ydeA [C]

Synonym: Mmcs_0150

Alternate gene names: 108797130

Gene position: 165208-166410 (Clockwise)

Preceding gene: 108797129

Following gene: 108797131

Centisome position: 2.9

GC content: 74.31

Gene sequence:

>1203_bases
TTGACCCGGGCATGGACACCGCGGGTCGCCGGACAGCTCACCGTGCTGGCCGCGGCCGCGTTCGTGTACGTGACCGCCGA
GGTGCTGCCGATCGGCGCGCTGCCGGCGATCGCGGCCGACCTGCGGGTCAGCGAGGCGCTCGTCGGCACCCTGCTCGCCG
GGTACGCGCTGGTCGCCGCGGTGACCACGATGCCGCTCGTACGTCTGACCGCATCCTGGCCGCGGCGCCGCACCCTGCTG
CTGACGCTGGTGTGCCTTACCGCGTCGCAGGCCGTCTGCGCACTCGCCCCGAACTTCGCGGTGCTCGCCGGTGGCCGGGT
GATGTGCGCGCTCACCCACGGGTTGATGTGGTCGGTCATCGCCCCGATCGGTGTGCGCCTGGTACCCGCCGATCACGCCG
CGCGCGCCACCACCGCGGTCTACGCCGGCACCGGTCTGGCTCTGGTGGTGGGTAATCCGCTCACCGCGGCGATGAGCCAG
CTGTGGGGATGGCGGACGGCGGTCGTCGTCGTCACCGCCGCCGCGGCGACGGTCACGGTCGCGGCGTGGCGCGCACTGCC
GCCGATGCGGTCACCGGCGAACGTGGCCACCCGGGTGGCCCCGCGGCCCCGCAACCCCAGGCTGGTCACGCTGGCGGCGC
TGACGTTGCTCGGGGTGACCGGACACTTCATGGCGTACACGTTCGTCGTGGTCGTCATCCGCGACGTCGTCGGTGTGCCC
GGTGCGCAGTCGGCGTGGCTGCTGGCCGCCTTCGGGGTCGCCGGGCTGGTCGGAATGGCCGCGCTGGCCCGCCCGGGGGA
CCGGCGGCCGCACCTGGCGGTGGTCGGCTGTCTGGCGGTGATGGTGCTTTCGTTCGGCGTGCTGACCGGGCTGGCGGCCG
GCCATCGCACCGGCCTGCTCGTGCTGGGCGTGGGCGCCCTGGCGGTCGTGGCCTGGGGTGCGGCGTCGACGGCGGTGCCG
CCGATGCTGCAGGCCGCGGTCATGCGGACGGCTCCGGAGGATCCTGACGGGGCCTCCGGGGTGTACGTGGCGGCGTTCCA
GATCGGCATCGTGGCCGGCGCGCTCGGCGGCGGTCTGCTCTACGAACGGGCCGGTGCCGGCCTGGTGCTGGCGGGTTCGA
CGGCCGTCACCGCGGTCGTGCTCGCCTGTGTCTTGCGGCGATCCGACCTGCTCAGGGCCCCCGCGACGGTTTCGGAACGG
TGA

Upstream 100 bases:

>100_bases
CGCCTCGGCTTCATCCGGGTCGCCGAGATCGAGGATTCCGACGACGGACCGCTCTGGCGCTGGGAGGTCGCCGTGCCGGC
CGGAGCGCGATGACGGTCGA

Downstream 100 bases:

>100_bases
CGGCGAACGCCGAGCTGGGGTTGCCGGCCGGCGTCCTGTGCGACACTGGACCTTGATCTGTGACTGGAGGTATCGGATGC
CGCAGCAGACCATGCGGAAG

Product: major facilitator transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTRAWTPRVAGQLTVLAAAAFVYVTAEVLPIGALPAIAADLRVSEALVGTLLAGYALVAAVTTMPLVRLTASWPRRRTLL
LTLVCLTASQAVCALAPNFAVLAGGRVMCALTHGLMWSVIAPIGVRLVPADHAARATTAVYAGTGLALVVGNPLTAAMSQ
LWGWRTAVVVVTAAAATVTVAAWRALPPMRSPANVATRVAPRPRNPRLVTLAALTLLGVTGHFMAYTFVVVVIRDVVGVP
GAQSAWLLAAFGVAGLVGMAALARPGDRRPHLAVVGCLAVMVLSFGVLTGLAAGHRTGLLVLGVGALAVVAWGAASTAVP
PMLQAAVMRTAPEDPDGASGVYVAAFQIGIVAGALGGGLLYERAGAGLVLAGSTAVTAVVLACVLRRSDLLRAPATVSER

Sequences:

>Translated_400_residues
MTRAWTPRVAGQLTVLAAAAFVYVTAEVLPIGALPAIAADLRVSEALVGTLLAGYALVAAVTTMPLVRLTASWPRRRTLL
LTLVCLTASQAVCALAPNFAVLAGGRVMCALTHGLMWSVIAPIGVRLVPADHAARATTAVYAGTGLALVVGNPLTAAMSQ
LWGWRTAVVVVTAAAATVTVAAWRALPPMRSPANVATRVAPRPRNPRLVTLAALTLLGVTGHFMAYTFVVVVIRDVVGVP
GAQSAWLLAAFGVAGLVGMAALARPGDRRPHLAVVGCLAVMVLSFGVLTGLAAGHRTGLLVLGVGALAVVAWGAASTAVP
PMLQAAVMRTAPEDPDGASGVYVAAFQIGIVAGALGGGLLYERAGAGLVLAGSTAVTAVVLACVLRRSDLLRAPATVSER
>Mature_399_residues
TRAWTPRVAGQLTVLAAAAFVYVTAEVLPIGALPAIAADLRVSEALVGTLLAGYALVAAVTTMPLVRLTASWPRRRTLLL
TLVCLTASQAVCALAPNFAVLAGGRVMCALTHGLMWSVIAPIGVRLVPADHAARATTAVYAGTGLALVVGNPLTAAMSQL
WGWRTAVVVVTAAAATVTVAAWRALPPMRSPANVATRVAPRPRNPRLVTLAALTLLGVTGHFMAYTFVVVVIRDVVGVPG
AQSAWLLAAFGVAGLVGMAALARPGDRRPHLAVVGCLAVMVLSFGVLTGLAAGHRTGLLVLGVGALAVVAWGAASTAVPP
MLQAAVMRTAPEDPDGASGVYVAAFQIGIVAGALGGGLLYERAGAGLVLAGSTAVTAVVLACVLRRSDLLRAPATVSER

Specific function: L-arabinose and isopropyl-b-D-thiogalactopyranoside exporter protein [C]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=389, Percent_Identity=29.5629820051414, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787947, Length=342, Percent_Identity=27.7777777777778, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693198, Length=355, Percent_Identity=25.0704225352113, Blast_Score=88, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40561; Mature: 40429

Theoretical pI: Translated: 11.74; Mature: 11.74

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAWTPRVAGQLTVLAAAAFVYVTAEVLPIGALPAIAADLRVSEALVGTLLAGYALVAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTTMPLVRLTASWPRRRTLLLTLVCLTASQAVCALAPNFAVLAGGRVMCALTHGLMWSVI
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCEEEECCEEEEHHHHHHHHHHH
APIGVRLVPADHAARATTAVYAGTGLALVVGNPLTAAMSQLWGWRTAVVVVTAAAATVTV
HHCCEEEECCCCHHHHHHHEEECCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
AAWRALPPMRSPANVATRVAPRPRNPRLVTLAALTLLGVTGHFMAYTFVVVVIRDVVGVP
HHHHCCCCCCCCCHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GAQSAWLLAAFGVAGLVGMAALARPGDRRPHLAVVGCLAVMVLSFGVLTGLAAGHRTGLL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
VLGVGALAVVAWGAASTAVPPMLQAAVMRTAPEDPDGASGVYVAAFQIGIVAGALGGGLL
EEHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHCCCHH
YERAGAGLVLAGSTAVTAVVLACVLRRSDLLRAPATVSER
HHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TRAWTPRVAGQLTVLAAAAFVYVTAEVLPIGALPAIAADLRVSEALVGTLLAGYALVAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTTMPLVRLTASWPRRRTLLLTLVCLTASQAVCALAPNFAVLAGGRVMCALTHGLMWSVI
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCCEEEECCEEEEHHHHHHHHHHH
APIGVRLVPADHAARATTAVYAGTGLALVVGNPLTAAMSQLWGWRTAVVVVTAAAATVTV
HHCCEEEECCCCHHHHHHHEEECCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
AAWRALPPMRSPANVATRVAPRPRNPRLVTLAALTLLGVTGHFMAYTFVVVVIRDVVGVP
HHHHCCCCCCCCCHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GAQSAWLLAAFGVAGLVGMAALARPGDRRPHLAVVGCLAVMVLSFGVLTGLAAGHRTGLL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
VLGVGALAVVAWGAASTAVPPMLQAAVMRTAPEDPDGASGVYVAAFQIGIVAGALGGGLL
EEHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHCCCHH
YERAGAGLVLAGSTAVTAVVLACVLRRSDLLRAPATVSER
HHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]