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The map label for this gene is exbD1 [H]

Identifier: 108762288

GI number: 108762288

Start: 1705595

End: 1706011

Strand: Reverse

Name: exbD1 [H]

Synonym: MXAN_1447

Alternate gene names: 108762288

Gene position: 1706011-1705595 (Counterclockwise)

Preceding gene: 108763298

Following gene: 108758607

Centisome position: 18.67

GC content: 59.23

Gene sequence:

>417_bases
ATGGGAATGTCAGCAGGCCCCAAGGGGAGCGTCAAGAGCGACATCAACGTCACGCCGCTGGTCGACGTGGTGCTGGTACT
CCTCATCATCTTCATGGTCGTCACCCCGATGCTCCAGCGTGGCAAGTCCGTGGAGCTCCCGAAGGCCACCGAGATCGAGA
AGGAAGGAAAAGGGAAGGAAGCCGACCCGCTCATCCTCTCCATCACCCCGGACAAGAAGGTGTTCGTGGAGAACGACCAG
GTGGATGAGAAAGGGCTCCAGGAGAAGCTCACCGCGGAAATCGAGAAGGATCCAGGCAAGAAGATCCTGCTCAAGGGTGA
TAACGCGCTCAGCGTTGGTGACGTGCGCAAGGTGCTGGACGTGGCCCGCAAGTCCAAGGCCAAGCAGATCTCCCTGGGCG
TCGAGGAGAAGAAGTAA

Upstream 100 bases:

>100_bases
CCCGATGCCCTTCACGGTGACCCTGTCTCCAGCTCTTCTTCGGGGCGCTGGAGGCCCACCGTGAAGGCGGGCACCTCCTT
ACCAGGAAACAGGTAAAGAC

Downstream 100 bases:

>100_bases
TGGCCGGCCGCAAGCAACGACAGTGGGTCAAGCCCCAGGCGCAGCCGAACTCGGAGATCAACGTCACGCCGCTGGTTGAC
GTGGTGCTGGTGCTCCTCAT

Product: biopolymer ExbD/TolR family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MGMSAGPKGSVKSDINVTPLVDVVLVLLIIFMVVTPMLQRGKSVELPKATEIEKEGKGKEADPLILSITPDKKVFVENDQ
VDEKGLQEKLTAEIEKDPGKKILLKGDNALSVGDVRKVLDVARKSKAKQISLGVEEKK

Sequences:

>Translated_138_residues
MGMSAGPKGSVKSDINVTPLVDVVLVLLIIFMVVTPMLQRGKSVELPKATEIEKEGKGKEADPLILSITPDKKVFVENDQ
VDEKGLQEKLTAEIEKDPGKKILLKGDNALSVGDVRKVLDVARKSKAKQISLGVEEKK
>Mature_137_residues
GMSAGPKGSVKSDINVTPLVDVVLVLLIIFMVVTPMLQRGKSVELPKATEIEKEGKGKEADPLILSITPDKKVFVENDQV
DEKGLQEKLTAEIEKDPGKKILLKGDNALSVGDVRKVLDVARKSKAKQISLGVEEKK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=34.6774193548387, Blast_Score=69, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14961; Mature: 14830

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMSAGPKGSVKSDINVTPLVDVVLVLLIIFMVVTPMLQRGKSVELPKATEIEKEGKGKE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC
ADPLILSITPDKKVFVENDQVDEKGLQEKLTAEIEKDPGKKILLKGDNALSVGDVRKVLD
CCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
VARKSKAKQISLGVEEKK
HHHHHCCCEEECCCCCCC
>Mature Secondary Structure 
GMSAGPKGSVKSDINVTPLVDVVLVLLIIFMVVTPMLQRGKSVELPKATEIEKEGKGKE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC
ADPLILSITPDKKVFVENDQVDEKGLQEKLTAEIEKDPGKKILLKGDNALSVGDVRKVLD
CCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
VARKSKAKQISLGVEEKK
HHHHHCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]