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The map label for this gene is choB [H]

Identifier: 108760749

GI number: 108760749

Start: 4591814

End: 4594177

Strand: Reverse

Name: choB [H]

Synonym: MXAN_3822

Alternate gene names: 108760749

Gene position: 4594177-4591814 (Counterclockwise)

Preceding gene: 108763138

Following gene: 108759420

Centisome position: 50.27

GC content: 68.65

Gene sequence:

>2364_bases
ATGGCGCCGACGTACGACGCGCTGGTCATTGGCACCGGCTTTGGGGGAGCGGTGGCGGCTTGCCGGCTGGCACAGGCGGG
CTTGACCGTGCGCGTCCTGGAGCGGGGCCTGCGCTACCAGAAGGGGAGCTTTCCCCGCGACTGGAGCAACCCGCTCAACG
GCTGGCTGTGGCGGTACGACCAGGGCCTCTTCGACGTGAAGCTGCTGCCGGGGATGAGCATTGTCCAGGCCGCGGGCTAC
GGCGGCGGCTCGCTCATCTACGCCAACGTCCACCTGCGCCCGCCCGCGGAGACCTTCGACGCCGACTGGCCGGAGGGCTA
CAGCCGCGCCGCGTTGGATCCGTACTACGACCTGGTCGCGTACATGCTGGACCTCCAGCCCATCACCGCGTCCGCACGTG
GCCTGCCCACCAAGGCGAAGCGGATGCGGGAGGTCGCGCGCAAACTCGGCCGCGAGCAGCAGTTCTTCTACCCGGACCTT
GCCGTGCGCTTCGCCCCCGCCGGCGAGCCGATGCCCAACAAGTTCGGCGTCGCCCAGGAGGGCTGCAACTACTGCGGCGA
ATGCGACATCGGATGCAACGTCCGCGCGAAGAACACGCTGGACCTGAACTACCTGGCCGTCGCTGAACAGCAGGGCGCGG
AGATGACCACCCAGGCGGAGGCCACGCGCATCGAGCCGCTGTCTCCCATGGGCTATCGCGTCACCTATACCGACCATGCC
GCGGGCGGCGCCGAGCGCACCGTGGAGGCCCGCCGCGTGTTCCTGTGCGCCGGCACGGTGAACACCACGGAGCTGCTGCT
GCGCTGCCGCGACCAGTGGGGAACGCTCCCGCGCATCAGCGACCGGCTGGGGTGCCGCTATTCGGCCAACGGCGACTTCC
TGGCCTTCGCCTTCGAGACGCGCGAGGTGTGGGACCCGTCCGAGGGCCCCACCATCACCACCAGTCTGGTGGTGGACCAG
GGGCAGGGCGCGGACAAGACGTGGTTCCTCTTCCAGGAGGGCGGGCACCCCGGGAAGGCGGCGGGGCTGCTTCAGGTGCT
GGACATGGGCCGGGACTTCCGTGTCCCCGCGGACCTGCTCCAGAAGCAACTCGTCCGCGCCCTGCGCCGGCGCTCCCAGC
CTGAAACCGTCATGGGCAAGGAGCGCGGGCGTTTCCAGGCCGTGTTCCTGGCCATGGGGAGGGATCGCGCCAACGGGCGG
CTCGCGCTGCGGCCTTTGACTCGGGACATGGAGGTGCGCTGGGACGTGCCTTCCAACCTGCCGCTGTACCGGACGCAGGA
GCAGATCTGCCAGGACATCGCTCGGGCGCTCGGGGCGCGCGCCGTCTTCAACCCCCTGTGGGATCGGCTTCACATCCCCG
TGTCAGTCCACAACCTGGGCGGCTGCACCATGGCGGAGGAGCCGGCCTACGGTGTGCTGAACCCGGACGGTGAGGTGCAC
GGCCACCCTGGGCTGTACGTGCTGGATGGCGCCGCGCTGCCCGCGAGCACCGGGGTGAACCCTTCATCCACCATCGCCGC
GGTGGCGGAGCGCAACGTCGAGGCCGCCATCCGGCAGGTGCTGGGGAACCCCACCTGGACCGCACCTGAGCGGGCCGGAA
CGGCTTCGGGCCGGGCGTCGGCGGAACCGTTCCGCGCGTCGATGCGGATGAGCACGAGTGTGGCACCCACGCGGGTGGTG
CCAAGAGAGGATCCGATGCGGAGCGTGGTGATTCCAGAGGGAGGCACAGTGCTGTCGCCAACGCCCGTGGTGGGGCTGCG
CTTCACCGAGCGGATGCGCGGCTTCATCAACCACGGCCACCTGCCGGACACGGATTACGCGGGCGCCGAGGAGGAGGGCA
AGTCAGAGGGCAGGGTGGCCGAGTTCATCCTCACCATCACCTTGCCCAATCTGGACCGCTTCCTCGCGGAGAAGGCCCAT
TCAGGCATCGCGCAAGGCACCGTCCACGTCCACGGCCTCACACCTCCTGGCGGAGCGAAGGTGGACCACGGCGTCTTCAA
CCTCTTCGTGGACACGGACAGCTACTACGAGCGTCGGATGCTCTACCTGCTGCCCTTCACCGGCATGGACGGCCAGCAGT
ACCTGCTGGATGGCTACAAGCATGTCCGGGACGACGACGGCTTCGACATGTGGTCCGACACGTCCACGCTCTACACCGTC
ATTCGCCGGGGCAGCGACCGGCACGCGCCCGTGGTCGCCAGCGGCATCATCCGTCTGGGCATGCCGGACTTCCTGCAGCA
GCTCACGACCTTCGCCGTGCTGGGAACGACGTCACCGCTGGCGAAGGCCCAGGCCCTGAAGCGTTTTGGCAGCATGTTCA
TGGGCAACCTCTGGGACGTCTTCGCGCGAACCAAGCTGGAATAA

Upstream 100 bases:

>100_bases
GGGTTCCCCGGATGGGTGGAGGTCGAAGGATCAGACCCTCGTGCGTTAATAAGGTGTCAGTTGAAACCTGCCGCGGGGAC
AGGTCTCGACGAGGGGGAAC

Downstream 100 bases:

>100_bases
GAGAGGCGCATCGTGGCGAAGGCATCGCGGTACGACGTGGTCGTCGTGGGCTCCGGCTTTGGGGGCTCCATCAGCGCGCT
GCGCCTGGCCCAGGCAGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: CHOD [H]

Number of amino acids: Translated: 787; Mature: 786

Protein sequence:

>787_residues
MAPTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYDQGLFDVKLLPGMSIVQAAGY
GGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVAYMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDL
AVRFAPAGEPMPNKFGVAQEGCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA
AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFETREVWDPSEGPTITTSLVVDQ
GQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLLQKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGR
LALRPLTRDMEVRWDVPSNLPLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH
GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRASAEPFRASMRMSTSVAPTRVV
PREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGHLPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAH
SGIAQGTVHVHGLTPPGGAKVDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV
IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDVFARTKLE

Sequences:

>Translated_787_residues
MAPTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYDQGLFDVKLLPGMSIVQAAGY
GGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVAYMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDL
AVRFAPAGEPMPNKFGVAQEGCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA
AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFETREVWDPSEGPTITTSLVVDQ
GQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLLQKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGR
LALRPLTRDMEVRWDVPSNLPLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH
GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRASAEPFRASMRMSTSVAPTRVV
PREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGHLPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAH
SGIAQGTVHVHGLTPPGGAKVDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV
IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDVFARTKLE
>Mature_786_residues
APTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYDQGLFDVKLLPGMSIVQAAGYG
GGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVAYMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDLA
VRFAPAGEPMPNKFGVAQEGCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHAA
GGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFETREVWDPSEGPTITTSLVVDQG
QGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLLQKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGRL
ALRPLTRDMEVRWDVPSNLPLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVHG
HPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRASAEPFRASMRMSTSVAPTRVVP
REDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGHLPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAHS
GIAQGTVHVHGLTPPGGAKVDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTVI
RRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDVFARTKLE

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: =1.1.3.6 [H]

Molecular weight: Translated: 86467; Mature: 86336

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYD
CCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
QGLFDVKLLPGMSIVQAAGYGGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVA
CCEEEEEECCCCHHHHHCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHH
YMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDLAVRFAPAGEPMPNKFGVAQE
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCCCCHHH
GCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA
HCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCHHCHHHCCCCCCCCCEEEEEECCC
AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFET
CCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCEEEEEEEC
REVWDPSEGPTITTSLVVDQGQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLL
CCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH
QKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGRLALRPLTRDMEVRWDVPSNL
HHHHHHHHHHCCCCCHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCC
PLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHEECCEEEECCCCCCCCCCCCCCCCCCCCCCC
GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRAS
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AEPFRASMRMSTSVAPTRVVPREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGH
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEHHHHHHHHHHHHCCC
LPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAHSGIAQGTVHVHGLTPPGGAK
CCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
VDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV
CCCCEEEEEECCCHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDV
HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FARTKLE
HHHHCCC
>Mature Secondary Structure 
APTYDALVIGTGFGGAVAACRLAQAGLTVRVLERGLRYQKGSFPRDWSNPLNGWLWRYD
CCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
QGLFDVKLLPGMSIVQAAGYGGGSLIYANVHLRPPAETFDADWPEGYSRAALDPYYDLVA
CCEEEEEECCCCHHHHHCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHH
YMLDLQPITASARGLPTKAKRMREVARKLGREQQFFYPDLAVRFAPAGEPMPNKFGVAQE
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCEEEEECCCCCCCCCCCCCHHH
GCNYCGECDIGCNVRAKNTLDLNYLAVAEQQGAEMTTQAEATRIEPLSPMGYRVTYTDHA
HCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCHHCHHHCCCCCCCCCEEEEEECCC
AGGAERTVEARRVFLCAGTVNTTELLLRCRDQWGTLPRISDRLGCRYSANGDFLAFAFET
CCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCEEEEEEEC
REVWDPSEGPTITTSLVVDQGQGADKTWFLFQEGGHPGKAAGLLQVLDMGRDFRVPADLL
CCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH
QKQLVRALRRRSQPETVMGKERGRFQAVFLAMGRDRANGRLALRPLTRDMEVRWDVPSNL
HHHHHHHHHHCCCCCHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCC
PLYRTQEQICQDIARALGARAVFNPLWDRLHIPVSVHNLGGCTMAEEPAYGVLNPDGEVH
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHEECCEEEECCCCCCCCCCCCCCCCCCCCCCC
GHPGLYVLDGAALPASTGVNPSSTIAAVAERNVEAAIRQVLGNPTWTAPERAGTASGRAS
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AEPFRASMRMSTSVAPTRVVPREDPMRSVVIPEGGTVLSPTPVVGLRFTERMRGFINHGH
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEHHHHHHHHHHHHCCC
LPDTDYAGAEEEGKSEGRVAEFILTITLPNLDRFLAEKAHSGIAQGTVHVHGLTPPGGAK
CCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
VDHGVFNLFVDTDSYYERRMLYLLPFTGMDGQQYLLDGYKHVRDDDGFDMWSDTSTLYTV
CCCCEEEEEECCCHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IRRGSDRHAPVVASGIIRLGMPDFLQQLTTFAVLGTTSPLAKAQALKRFGSMFMGNLWDV
HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FARTKLE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1879703; 2271066; 2051487 [H]