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The map label for this gene is rimM

Identifier: 108760176

GI number: 108760176

Start: 4131305

End: 4131871

Strand: Direct

Name: rimM

Synonym: MXAN_3547

Alternate gene names: 108760176

Gene position: 4131305-4131871 (Clockwise)

Preceding gene: 108759104

Following gene: 108763843

Centisome position: 45.2

GC content: 70.02

Gene sequence:

>567_bases
GTGACGGCCACCAGTCCCTATCTGGAGCTGGGATACGTCGCGCGCGCTCACGGGCTGCGTGGCGAGGTCGCCATTCGCGC
GCTGGATCCGGCGTCGGAGACGCTCGACACCGTCGATCGCATCTGGGTGCGGACGCGCGCCGGTGTGGAGCGGGAAATGC
GGCTGGAGGCGCTCCGGCCCACGCCCAAGGAGGACATCGTGGTCCTCGAGGGCGTGGAGTCGCGGAACGACGCGGAGGCG
CTCGTGGGCGCCAAGGTGTTCGTCTTCCGCGAGGATCTGGAGCCGCCCGCGGAGGGCGAGTTCTTCCAGGGTGACTTGGT
GGGGCTCGATGCCGTGGACGCCAACGGGAACGCGTTGGGCCGGGTGGAGGAGATCTGGACCACCGGCGAGGTGCCCAACC
TGGTCATTCGCGCTTCCGGGCGCGAGGAGCTGGTGGTTCCCTTCGCCGACGAGTTCGTCCCCACCGTGGACCTCGAGGCG
CGGCGCATCGTCATCCATCCGCCCGAGTACGTGGAGGCGGGACGCAAGGGCGCCGAGTCAGGAGGAGGCCCGGAGGACGC
GGAATGA

Upstream 100 bases:

>100_bases
TCAATGCCGCCGCACAGAAGTCCGGGCAGAAGGTCCGCCTGGAGATTCTCGACGACCGGCGCAATGCAGCAGGCGCTCCG
GTCGCGCCGGACTCCGCTCA

Downstream 100 bases:

>100_bases
GCCCACCGTATCCGGTGGAGATCCTCACGTTGTTCCCCGGCATGGTGACCGGTTACCTGGGGGCCAGCATCCTCGGGAAG
GCTCAGGAGAAGGGCCTGCT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MTATSPYLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEALRPTPKEDIVVLEGVESRNDAEA
LVGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNALGRVEEIWTTGEVPNLVIRASGREELVVPFADEFVPTVDLEA
RRIVIHPPEYVEAGRKGAESGGGPEDAE

Sequences:

>Translated_188_residues
MTATSPYLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEALRPTPKEDIVVLEGVESRNDAEA
LVGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNALGRVEEIWTTGEVPNLVIRASGREELVVPFADEFVPTVDLEA
RRIVIHPPEYVEAGRKGAESGGGPEDAE
>Mature_187_residues
TATSPYLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEALRPTPKEDIVVLEGVESRNDAEAL
VGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNALGRVEEIWTTGEVPNLVIRASGREELVVPFADEFVPTVDLEAR
RIVIHPPEYVEAGRKGAESGGGPEDAE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=171, Percent_Identity=29.2397660818713, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_MYXXD (Q1D6I3)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_631740.1
- ProteinModelPortal:   Q1D6I3
- SMR:   Q1D6I3
- STRING:   Q1D6I3
- GeneID:   4103322
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_3547
- TIGR:   MXAN_3547
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- PhylomeDB:   Q1D6I3
- BioCyc:   MXAN246197:MXAN_3547-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20476; Mature: 20345

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATSPYLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEALRP
CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
TPKEDIVVLEGVESRNDAEALVGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNALG
CCCCCEEEEECCCCCCCHHHHHCEEEEEEECCCCCCCCCCEECCCEEEEEEECCCCCCCC
RVEEIWTTGEVPNLVIRASGREELVVPFADEFVPTVDLEARRIVIHPPEYVEAGRKGAES
HHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCHHHHHHCCCCCCC
GGGPEDAE
CCCCCCCC
>Mature Secondary Structure 
TATSPYLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEALRP
CCCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
TPKEDIVVLEGVESRNDAEALVGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNALG
CCCCCEEEEECCCCCCCHHHHHCEEEEEEECCCCCCCCCCEECCCEEEEEEECCCCCCCC
RVEEIWTTGEVPNLVIRASGREELVVPFADEFVPTVDLEARRIVIHPPEYVEAGRKGAES
HHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCHHHHHHCCCCCCC
GGGPEDAE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA