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The map label for this gene is yibD [C]

Identifier: 108759634

GI number: 108759634

Start: 5790997

End: 5793249

Strand: Direct

Name: yibD [C]

Synonym: MXAN_4616

Alternate gene names: 108759634

Gene position: 5790997-5793249 (Clockwise)

Preceding gene: 108760751

Following gene: 108758385

Centisome position: 63.36

GC content: 66.93

Gene sequence:

>2253_bases
TTGAGGCAGGCGGCCGTTCGGGTGTATTCCCCAGCCGTTCGACGCTTTCCTCTGTCCAGGGTCCGGTCCTTGCGCATCTG
CCTCGTCTCCAAAGAACTCGCCCCCTTCGACAGGGGCGACATCGCGACCTACGTGGCAACCATGAGCCGGGCGCTTGCGG
AGGCCGGACATGAGGTCCATGTCTTGACGGCGGCGCATGCCGACTGGCAGCGGGCCGTGTCCTACCTCCCCGGCGTGCAC
CTGCACGCGGTGGATGAGCGAGAGGTGGACTTCAAGGGTGCGTTTCCACACGCCCCCCTTCGGCATGCGTGGGCGGCGTA
CAGAAGCCTGCTGGAACTCAACGCGCGTCATCCCTTCGACGTCATCGAGTTCCCCGACGACGCAGGCGAGGGCTATTTCG
CGATGCGCGCCCGGCGGACGCTGGGGCACTTCGAGCCAGCGGTCCTCGCGGTGCGCTTGCACGACTCCACCCACGACCGC
CTGCTGCTCAACAGAGTGGCCACGCTCGACATGGACATCGCCCAGCGCGAGCACATGGAGGACACGTCCATCCGTGAAGC
GGACCTCGTGCTGTCTCCCTCCGGACCAGCCATGGAGCGAGTCCGCATCAGGCTGGAGCTGAAGCGCACCGGCGTCGTGA
TTCCACCTCCGTTCGCGTCACGCCGGGAGCACCGCTCATCCCCGCGTTCCCACGAAGGACTGCCCCAGGTGCTGTACGTC
GGAGACCTGGAGTACCGAAAGGGCGTGCATCTTCTCGTCGAAGCCATGCAGGTGCTCTTCGAGCAAGGCGTCGTCGCGGA
GGTCCGGCTCATCGGGGCTGACACGCGCACCGGCCCGTTCGGCCGCTCCCTGCGACAGTGGCTGGACCAGCGCATCGCCC
CCGCCTGGCGAAACAGGTTCCACTTCGCACCTCCGCTCGAGGGGGCAGACCTCGCGTCGGCGCTCGCCGAAGCAACCGTG
TGCTGCATCCCCTCTCGCTGGGAGCACTTCTCCCACGTGTGCATGGAAGCCATGTCCGCAGGAGCGCTCGTGGTGGGCAG
CGATGGAGGGGGCAACGCCGAACTCATCGAGGACGGCCAGAGCGGCTTGCTGTTCCGGAGCGACGATGCTTCGCGGCTTG
CCCGCGCGCTCGAGCGAGCCCTGTCCACACCGGCGCTCCAAGAAGCCGTCCGGCAGACAGCGCCAGCGCGCATCGCTGCC
TATTGCGCTCCCGCCAGCATCGTCCGCCAGTTCGAAGCGGCAGTGGCGGATGCGCGGCGCCATCGTCACGTGGGCCCCAT
CAGCGCCGCGACCAGGAAGAAGGACTCGGCCACACCGTACGTGTCCATCCTCGTGCCCTACTACAACATGGGGCGCTACC
TCCCCGAGACGCTGCGGTCCATTCGCGCCCAGACCTTCACGGACTACGAAATCATCCTCGTGGATGACGGCTCGACGGAT
TCGGAGAGCCGGGCCGTGCTGGAGACGCTCCACGAGCCAGACCTCCACATCCTCCGCAAGCCCAACGGAGGGCTCAGCTC
GGCCAGGAACGCCGGTCTGCGCGCGGCACGGGGCCGGTATGTCCTCCCGCTGGACCCGGACGACCTCATCCAGCCCACCT
TCCTGGAGAAAGCCGTCGCGGTGATGGACAGCACCCCAGGGCTGGCCTACGTCACGTCACTCGTCTCCTATTTCGTCGAG
TCGCCGGACCAGCCCGTGGGCGGATGGATTCCCTGGGGCACCGAGCGTGACGCGCTCCTCGCGGAGAACGTGGCCTCGAC
CTGCACCGCGCTGATGGAGCGACAGCGCATCGAAGAAATCGGCGGCTACGACGAGTGGCTTACGGCCTATGAAGACTGGG
ACGTCTTCTGCTCCCTGGCCGAGCGAGGGCTCGCGGGCTCCGTCATCCCGGAACCACTCTTCCTGTACCGGCTGCGTCCG
GACTCGATGACCCGCAGCATGCGAGTGAATGACCGTCATGCGCAGATGGCCTACCTGTGCCAGAAGCACCCTGCGTTGCC
GCTCCACCCGGAGCGCGCACTCCGCATGCAGCTCGGCCGGGCCCACAGGCAGGAACTCCATCTTCGCGCGACAGGCTCGG
CCTCCCCACCACTCCTGAATCGCTTCGCCGACAAGATGAACGCCACGCTCAAGCGGTTCGACTTCGCCCATGCCACCTTG
AGGCGCGCCGCGCTTTGGGTCGCGGGAGCAGACGACGACTCCCGCCCACTGCGTCATCAGGTCATGGAGCGGTTCTTCAG
GCGCCGCAATTGA

Upstream 100 bases:

>100_bases
GGGACCTCGGCACGTCATCCTCGTGAACCCGGGTCCCGCAGGAGGATGCGCGAACGCCTCCGGCCTCGACCTGCGATGAG
CATGTGACTCAGGGGCAGCG

Downstream 100 bases:

>100_bases
AGCGTCGGCCGCTCCATGCGGCGGAGCCGGCCCCATATACGTGCGCTACCCGCCCAACCGCCCCTCCTCTGCCGGTGGAA
GTGAAGCGGGCTCTCGAGGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 750; Mature: 750

Protein sequence:

>750_residues
MRQAAVRVYSPAVRRFPLSRVRSLRICLVSKELAPFDRGDIATYVATMSRALAEAGHEVHVLTAAHADWQRAVSYLPGVH
LHAVDEREVDFKGAFPHAPLRHAWAAYRSLLELNARHPFDVIEFPDDAGEGYFAMRARRTLGHFEPAVLAVRLHDSTHDR
LLLNRVATLDMDIAQREHMEDTSIREADLVLSPSGPAMERVRIRLELKRTGVVIPPPFASRREHRSSPRSHEGLPQVLYV
GDLEYRKGVHLLVEAMQVLFEQGVVAEVRLIGADTRTGPFGRSLRQWLDQRIAPAWRNRFHFAPPLEGADLASALAEATV
CCIPSRWEHFSHVCMEAMSAGALVVGSDGGGNAELIEDGQSGLLFRSDDASRLARALERALSTPALQEAVRQTAPARIAA
YCAPASIVRQFEAAVADARRHRHVGPISAATRKKDSATPYVSILVPYYNMGRYLPETLRSIRAQTFTDYEIILVDDGSTD
SESRAVLETLHEPDLHILRKPNGGLSSARNAGLRAARGRYVLPLDPDDLIQPTFLEKAVAVMDSTPGLAYVTSLVSYFVE
SPDQPVGGWIPWGTERDALLAENVASTCTALMERQRIEEIGGYDEWLTAYEDWDVFCSLAERGLAGSVIPEPLFLYRLRP
DSMTRSMRVNDRHAQMAYLCQKHPALPLHPERALRMQLGRAHRQELHLRATGSASPPLLNRFADKMNATLKRFDFAHATL
RRAALWVAGADDDSRPLRHQVMERFFRRRN

Sequences:

>Translated_750_residues
MRQAAVRVYSPAVRRFPLSRVRSLRICLVSKELAPFDRGDIATYVATMSRALAEAGHEVHVLTAAHADWQRAVSYLPGVH
LHAVDEREVDFKGAFPHAPLRHAWAAYRSLLELNARHPFDVIEFPDDAGEGYFAMRARRTLGHFEPAVLAVRLHDSTHDR
LLLNRVATLDMDIAQREHMEDTSIREADLVLSPSGPAMERVRIRLELKRTGVVIPPPFASRREHRSSPRSHEGLPQVLYV
GDLEYRKGVHLLVEAMQVLFEQGVVAEVRLIGADTRTGPFGRSLRQWLDQRIAPAWRNRFHFAPPLEGADLASALAEATV
CCIPSRWEHFSHVCMEAMSAGALVVGSDGGGNAELIEDGQSGLLFRSDDASRLARALERALSTPALQEAVRQTAPARIAA
YCAPASIVRQFEAAVADARRHRHVGPISAATRKKDSATPYVSILVPYYNMGRYLPETLRSIRAQTFTDYEIILVDDGSTD
SESRAVLETLHEPDLHILRKPNGGLSSARNAGLRAARGRYVLPLDPDDLIQPTFLEKAVAVMDSTPGLAYVTSLVSYFVE
SPDQPVGGWIPWGTERDALLAENVASTCTALMERQRIEEIGGYDEWLTAYEDWDVFCSLAERGLAGSVIPEPLFLYRLRP
DSMTRSMRVNDRHAQMAYLCQKHPALPLHPERALRMQLGRAHRQELHLRATGSASPPLLNRFADKMNATLKRFDFAHATL
RRAALWVAGADDDSRPLRHQVMERFFRRRN
>Mature_750_residues
MRQAAVRVYSPAVRRFPLSRVRSLRICLVSKELAPFDRGDIATYVATMSRALAEAGHEVHVLTAAHADWQRAVSYLPGVH
LHAVDEREVDFKGAFPHAPLRHAWAAYRSLLELNARHPFDVIEFPDDAGEGYFAMRARRTLGHFEPAVLAVRLHDSTHDR
LLLNRVATLDMDIAQREHMEDTSIREADLVLSPSGPAMERVRIRLELKRTGVVIPPPFASRREHRSSPRSHEGLPQVLYV
GDLEYRKGVHLLVEAMQVLFEQGVVAEVRLIGADTRTGPFGRSLRQWLDQRIAPAWRNRFHFAPPLEGADLASALAEATV
CCIPSRWEHFSHVCMEAMSAGALVVGSDGGGNAELIEDGQSGLLFRSDDASRLARALERALSTPALQEAVRQTAPARIAA
YCAPASIVRQFEAAVADARRHRHVGPISAATRKKDSATPYVSILVPYYNMGRYLPETLRSIRAQTFTDYEIILVDDGSTD
SESRAVLETLHEPDLHILRKPNGGLSSARNAGLRAARGRYVLPLDPDDLIQPTFLEKAVAVMDSTPGLAYVTSLVSYFVE
SPDQPVGGWIPWGTERDALLAENVASTCTALMERQRIEEIGGYDEWLTAYEDWDVFCSLAERGLAGSVIPEPLFLYRLRP
DSMTRSMRVNDRHAQMAYLCQKHPALPLHPERALRMQLGRAHRQELHLRATGSASPPLLNRFADKMNATLKRFDFAHATL
RRAALWVAGADDDSRPLRHQVMERFFRRRN

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=107, Percent_Identity=35.5140186915888, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 83924; Mature: 83924

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAAVRVYSPAVRRFPLSRVRSLRICLVSKELAPFDRGDIATYVATMSRALAEAGHEVH
CCCCHHHHHHHHHHHCCHHHHHHHHHHEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCEEE
VLTAAHADWQRAVSYLPGVHLHAVDEREVDFKGAFPHAPLRHAWAAYRSLLELNARHPFD
EEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
VIEFPDDAGEGYFAMRARRTLGHFEPAVLAVRLHDSTHDRLLLNRVATLDMDIAQREHME
EEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
DTSIREADLVLSPSGPAMERVRIRLELKRTGVVIPPPFASRREHRSSPRSHEGLPQVLYV
CCCCCCCCEEECCCCCCCHHEEEEEEEECCCEEECCCCCCHHHHCCCCCCCCCCCCEEEE
GDLEYRKGVHLLVEAMQVLFEQGVVAEVRLIGADTRTGPFGRSLRQWLDQRIAPAWRNRF
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHCCC
HFAPPLEGADLASALAEATVCCIPSRWEHFSHVCMEAMSAGALVVGSDGGGNAELIEDGQ
CCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCC
SGLLFRSDDASRLARALERALSTPALQEAVRQTAPARIAAYCAPASIVRQFEAAVADARR
CCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHH
HRHVGPISAATRKKDSATPYVSILVPYYNMGRYLPETLRSIRAQTFTDYEIILVDDGSTD
HCCCCCCHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
SESRAVLETLHEPDLHILRKPNGGLSSARNAGLRAARGRYVLPLDPDDLIQPTFLEKAVA
CHHHHHHHHHCCCCCEEEECCCCCCCHHHHCCCHHCCCCEEECCCHHHHCCHHHHHHHHH
VMDSTPGLAYVTSLVSYFVESPDQPVGGWIPWGTERDALLAENVASTCTALMERQRIEEI
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GGYDEWLTAYEDWDVFCSLAERGLAGSVIPEPLFLYRLRPDSMTRSMRVNDRHAQMAYLC
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHCCCCCHHHHHHHHH
QKHPALPLHPERALRMQLGRAHRQELHLRATGSASPPLLNRFADKMNATLKRFDFAHATL
HHCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRAALWVAGADDDSRPLRHQVMERFFRRRN
HHHHEEEECCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRQAAVRVYSPAVRRFPLSRVRSLRICLVSKELAPFDRGDIATYVATMSRALAEAGHEVH
CCCCHHHHHHHHHHHCCHHHHHHHHHHEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCEEE
VLTAAHADWQRAVSYLPGVHLHAVDEREVDFKGAFPHAPLRHAWAAYRSLLELNARHPFD
EEEECCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
VIEFPDDAGEGYFAMRARRTLGHFEPAVLAVRLHDSTHDRLLLNRVATLDMDIAQREHME
EEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
DTSIREADLVLSPSGPAMERVRIRLELKRTGVVIPPPFASRREHRSSPRSHEGLPQVLYV
CCCCCCCCEEECCCCCCCHHEEEEEEEECCCEEECCCCCCHHHHCCCCCCCCCCCCEEEE
GDLEYRKGVHLLVEAMQVLFEQGVVAEVRLIGADTRTGPFGRSLRQWLDQRIAPAWRNRF
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHCCC
HFAPPLEGADLASALAEATVCCIPSRWEHFSHVCMEAMSAGALVVGSDGGGNAELIEDGQ
CCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCC
SGLLFRSDDASRLARALERALSTPALQEAVRQTAPARIAAYCAPASIVRQFEAAVADARR
CCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHH
HRHVGPISAATRKKDSATPYVSILVPYYNMGRYLPETLRSIRAQTFTDYEIILVDDGSTD
HCCCCCCHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
SESRAVLETLHEPDLHILRKPNGGLSSARNAGLRAARGRYVLPLDPDDLIQPTFLEKAVA
CHHHHHHHHHCCCCCEEEECCCCCCCHHHHCCCHHCCCCEEECCCHHHHCCHHHHHHHHH
VMDSTPGLAYVTSLVSYFVESPDQPVGGWIPWGTERDALLAENVASTCTALMERQRIEEI
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GGYDEWLTAYEDWDVFCSLAERGLAGSVIPEPLFLYRLRPDSMTRSMRVNDRHAQMAYLC
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHCCCCCHHHHHHHHH
QKHPALPLHPERALRMQLGRAHRQELHLRATGSASPPLLNRFADKMNATLKRFDFAHATL
HHCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRAALWVAGADDDSRPLRHQVMERFFRRRN
HHHHEEEECCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA