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The map label for this gene is ycdC [C]

Identifier: 108759411

GI number: 108759411

Start: 4007359

End: 4008009

Strand: Direct

Name: ycdC [C]

Synonym: MXAN_3443

Alternate gene names: 108759411

Gene position: 4007359-4008009 (Clockwise)

Preceding gene: 108758573

Following gene: 108760370

Centisome position: 43.85

GC content: 70.81

Gene sequence:

>651_bases
ATGCCCCGTCCCCGCGCCAGCAGGCTCGACCCCGAGCGCAGACAGACACTCCTCGCCGTGGCCGCGGAGGAGTTCGCGGA
GCACGGCTTCGATGGGGCCTCCTACAACCGCATCCTGGAGCGCGCGGGCTTCTCGAAGGGGGTCGCGTACTACTACTTCG
AGGGCAAGGACGACCTTTATGCCGCCGTGCTGGCCCTCACGTTGGACACGCTGGCGCAGCGATTCGGGGCCTGGCATCGG
CCCGCGGACGCGGACGGCTTCTGGCGCACCCTGCGTGAGCGGTACTTCGCGCTGACGACGCACATCGTGAACGACGAGCG
CTCGGCCCGGCTTCTCCGAAGCATGTCGCAGGCGCGCACCCATCCGAAGCTTCAGGCGGCGTGGCTGCGCTTCGAAGGGC
CGCTGGTGGCGTGGTTCCAGCGCGTCCTGGCGGACGGGCGCGCGCTGGGCGCGGTGCGTGGCGATGTGCCGGAGTCCCTG
CTGCTGACGTCCCTCATGGGTATCGGACAGGTCACGGATGGGTGGCTGCTCGAACAGTGGGCGCACAGCGGCGTGCCGGC
GCTCCAGCGCGGGGCGGAGCAGGTGTTCTCCCTCTTCGAGGACCTGCTGGTCCCCAGGCCCGTGGGCCCGCCTCCCGCGA
AGCGGCGCTGA

Upstream 100 bases:

>100_bases
CGCTCATTCGGGCGGACCGCGCCATCGTCGCGTGGCATGAGCTGCATCGCGCGGCGCTCGGCGACACTCCTGGCGCATCC
TGATAGAAGCGCTGCGTCCG

Downstream 100 bases:

>100_bases
GGCGGACCCTGGCGCGGGCAGGGCGTCTCAGTAGGCGCGGGCCCGGTTCGCGCAGGACCCCTGGACGCCGCGGCAGAGCC
GGATGCGAAACCTGTTCCCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MPRPRASRLDPERRQTLLAVAAEEFAEHGFDGASYNRILERAGFSKGVAYYYFEGKDDLYAAVLALTLDTLAQRFGAWHR
PADADGFWRTLRERYFALTTHIVNDERSARLLRSMSQARTHPKLQAAWLRFEGPLVAWFQRVLADGRALGAVRGDVPESL
LLTSLMGIGQVTDGWLLEQWAHSGVPALQRGAEQVFSLFEDLLVPRPVGPPPAKRR

Sequences:

>Translated_216_residues
MPRPRASRLDPERRQTLLAVAAEEFAEHGFDGASYNRILERAGFSKGVAYYYFEGKDDLYAAVLALTLDTLAQRFGAWHR
PADADGFWRTLRERYFALTTHIVNDERSARLLRSMSQARTHPKLQAAWLRFEGPLVAWFQRVLADGRALGAVRGDVPESL
LLTSLMGIGQVTDGWLLEQWAHSGVPALQRGAEQVFSLFEDLLVPRPVGPPPAKRR
>Mature_215_residues
PRPRASRLDPERRQTLLAVAAEEFAEHGFDGASYNRILERAGFSKGVAYYYFEGKDDLYAAVLALTLDTLAQRFGAWHRP
ADADGFWRTLRERYFALTTHIVNDERSARLLRSMSQARTHPKLQAAWLRFEGPLVAWFQRVLADGRALGAVRGDVPESLL
LTSLMGIGQVTDGWLLEQWAHSGVPALQRGAEQVFSLFEDLLVPRPVGPPPAKRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24315; Mature: 24184

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPRASRLDPERRQTLLAVAAEEFAEHGFDGASYNRILERAGFSKGVAYYYFEGKDDLY
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHH
AAVLALTLDTLAQRFGAWHRPADADGFWRTLRERYFALTTHIVNDERSARLLRSMSQART
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
HPKLQAAWLRFEGPLVAWFQRVLADGRALGAVRGDVPESLLLTSLMGIGQVTDGWLLEQW
CCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
AHSGVPALQRGAEQVFSLFEDLLVPRPVGPPPAKRR
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PRPRASRLDPERRQTLLAVAAEEFAEHGFDGASYNRILERAGFSKGVAYYYFEGKDDLY
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHH
AAVLALTLDTLAQRFGAWHRPADADGFWRTLRERYFALTTHIVNDERSARLLRSMSQART
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
HPKLQAAWLRFEGPLVAWFQRVLADGRALGAVRGDVPESLLLTSLMGIGQVTDGWLLEQW
CCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
AHSGVPALQRGAEQVFSLFEDLLVPRPVGPPPAKRR
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA