Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 108758122

GI number: 108758122

Start: 6123084

End: 6123320

Strand: Direct

Name: rpoZ

Synonym: MXAN_4890

Alternate gene names: 108758122

Gene position: 6123084-6123320 (Clockwise)

Preceding gene: 108758034

Following gene: 108759998

Centisome position: 66.99

GC content: 69.62

Gene sequence:

>237_bases
ATGGCTCGCGTTACCGTCGAAGACTGCCTCCCCCTCGTCGACAACCGGTTCGCGCTGGTGCTGCTCGGCGCCAAGCGCGC
GCGGCAGCTGATGGCGGGTGCCCGCCCCATCCTCGAGCAGTCCAAGAACAAGCCCCCCGTGCTGTCCCTGCGCGAGGTGG
CCACCGGCCGCGTGAAGTTCGACCGTGACGTGCGCGAGGCGCTGTCCGGCAAGTACACGGGCGACGAGCCCAAGTAG

Upstream 100 bases:

>100_bases
CGCCCGGCTGCCCTCCGGTGCGTCCTTCCTTGACTCGCCGGGGGGTGCTCTTTAGGTTCAGAGGCTTCCAGTAGCCCCAC
CGAAATCCGAAGGACGTTCC

Downstream 100 bases:

>100_bases
TCCCCGCGGTTCCCTTCAGCCCCCTTCCTTCCCGGCAATGCTCACCGGGGAGGGGGCTTCGGGGAGCAGGCCCTGGGAGC
GCAACCAGCGCACCGCCCGC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKFDRDVREALSGKYTGDEPK

Sequences:

>Translated_78_residues
MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKFDRDVREALSGKYTGDEPK
>Mature_77_residues
ARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKFDRDVREALSGKYTGDEPK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_MYXXD (Q1D2S6)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_633047.1
- STRING:   Q1D2S6
- GeneID:   4103718
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_4890
- TIGR:   MXAN_4890
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- ProtClustDB:   PRK00392
- BioCyc:   MXAN246197:MXAN_4890-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8663; Mature: 8532

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKF
CCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHCCCCCCCCEEHHHHHCCCCCC
DRDVREALSGKYTGDEPK
CHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKF
CCCCHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHCCCCCCCCEEHHHHHCCCCCC
DRDVREALSGKYTGDEPK
CHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA