Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is crcB [H]
Identifier: 108563592
GI number: 108563592
Start: 1233255
End: 1233647
Strand: Direct
Name: crcB [H]
Synonym: HPAG1_1167
Alternate gene names: 108563592
Gene position: 1233255-1233647 (Clockwise)
Preceding gene: 108563591
Following gene: 108563594
Centisome position: 77.25
GC content: 39.95
Gene sequence:
>393_bases ATGAATTTTGTCTTTTTATGGGCCGCTTTAGGGGGGGCTATAGGGAGTTCGTTAAGGTATTTTGTGGGCAAAGTGATGCC CAGTAAATTTTTAATGTTTGAAAGTTTCCCTTTAGGGACTTTTAGCGTGAACCTCATAGGGTGTTTTGTCATCGGCTTTA TGGGGCATTTGGCCGCTAAAAAAGTTTTTGGCGATGATTTTGGGATTTTCTTTGTCACCGGGGTTTTAGGGGGTTTTACG ACCTTTTCTTCTTATGGGCTAGACACTTTAAAACTCTTGCAAAAATCCCAATACCTTGAAGCCGTTTCTTATGTCTTAGG CACTAACCTTTTAGGGCTTATTGGGGTAGCTATTGGTTGGTTTTTGGCTAAAAATTTTGTAGGCGTTAATTAA
Upstream 100 bases:
>100_bases CCTTAGAAGCGTGTTTAGAACTGGCTTTAAGTTTGAGAATTAAGGAATGTTAAAAACATCTCATTATAATGCTCTCAGTT ATTTTGTTAAAGGATGACGC
Downstream 100 bases:
>100_bases AAAACGCTTTTTGGCGTTTTATTAACGCTTGATTAAAGCAGAGCCTACAATCACAACAGCCACAAAGCCATTTCATCGGC CATGAAAAAATCGCTCGCTA
Product: camphor resistance protein CrcB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MNFVFLWAALGGAIGSSLRYFVGKVMPSKFLMFESFPLGTFSVNLIGCFVIGFMGHLAAKKVFGDDFGIFFVTGVLGGFT TFSSYGLDTLKLLQKSQYLEAVSYVLGTNLLGLIGVAIGWFLAKNFVGVN
Sequences:
>Translated_130_residues MNFVFLWAALGGAIGSSLRYFVGKVMPSKFLMFESFPLGTFSVNLIGCFVIGFMGHLAAKKVFGDDFGIFFVTGVLGGFT TFSSYGLDTLKLLQKSQYLEAVSYVLGTNLLGLIGVAIGWFLAKNFVGVN >Mature_130_residues MNFVFLWAALGGAIGSSLRYFVGKVMPSKFLMFESFPLGTFSVNLIGCFVIGFMGHLAAKKVFGDDFGIFFVTGVLGGFT TFSSYGLDTLKLLQKSQYLEAVSYVLGTNLLGLIGVAIGWFLAKNFVGVN
Specific function: Not Known. Overproduction Leads To Camphor Resistance And Chromosome Condensation; Deletion Increases Sensibility To Nucleoid Decondensation. Probably Interacts With The Heat-Shock Protein Cspe, Possibly Providing A Way To Anchor The Chromosome To The Mem
COG id: COG0239
COG function: function code D; Integral membrane protein possibly involved in chromosome condensation
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CrcB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003691 [H]
Pfam domain/function: PF02537 CRCB [H]
EC number: NA
Molecular weight: Translated: 14036; Mature: 14036
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFVFLWAALGGAIGSSLRYFVGKVMPSKFLMFESFPLGTFSVNLIGCFVIGFMGHLAAK CCEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH KVFGDDFGIFFVTGVLGGFTTFSSYGLDTLKLLQKSQYLEAVSYVLGTNLLGLIGVAIGW HHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLAKNFVGVN HHHHHHCCCC >Mature Secondary Structure MNFVFLWAALGGAIGSSLRYFVGKVMPSKFLMFESFPLGTFSVNLIGCFVIGFMGHLAAK CCEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH KVFGDDFGIFFVTGVLGGFTTFSSYGLDTLKLLQKSQYLEAVSYVLGTNLLGLIGVAIGW HHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLAKNFVGVN HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA