Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
---|---|
Accession | NC_008086 |
Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is nlaIIIM [H]
Identifier: 108563574
GI number: 108563574
Start: 1216030
End: 1217019
Strand: Reverse
Name: nlaIIIM [H]
Synonym: HPAG1_1149
Alternate gene names: 108563574
Gene position: 1217019-1216030 (Counterclockwise)
Preceding gene: 108563575
Following gene: 108563573
Centisome position: 76.24
GC content: 36.87
Gene sequence:
>990_bases ATGAACTACATCGGCTCTAAATACAAGCTCATTCCTTTTATTAAAGAAAATATCCATGCGGTTGTAGGGGACAACCTTTC TGGTGCGATTTTTTGTGATCTGTTCGCTGGGACGGGCATTGTGGGGCGTGCATTTAAAAAAGCTGTTAATAAGGTTATTT CTAATGATTTGGAATATTATAGCTTTGTTTTGAATCAAAATTATATCGGCAACATTCAAGAAATCCCTAATCAAGAAGAG CTTATTGATAGGCTCAATAGCGTTGCTTTAAAAAAGGGTTTTATTCATTCGCATTATTCTTTAGGGGGGAGTTCAAGGCA GTATTTTAGCGAAACAAACGCTCAAAAAATTGATGCGATGCGTTTAAAAATTGAAGAGCTTAAACTTTCTCAAAACATTG ATAATTGTGCGTATTATTTTTTGCTCGCATCACTATTAGAGAGCGCGGACAAGGTGGCTAACACCGCTTCAGTTTATGGG GCTTTTTTAAAACGCCTTAAAAAAAGCGCTCAAAAAGAACTCATCTTAAAAGGCGCTCATTTTGATGTGAGTTTAAACGC TAATGAAGTGTATCAGCAAGATTCTAGCGAGTTGATCGGAAAGATTTCAGGGGATATTTTGTATTTAGACCCTCCTTATA ATGCGAGGCAATACGGGGCGAATTACCATTTATTAAACACGATTGCTATTTATACGCCCTTTGCTCCAAAAGGCAAAACC GGCTTGCCCAGTTACCAGAAATCATCGTTTTGCTCTCGCGCTAAAATCTTAAACGCTTTTGAAAATTTAATCAAAAAATC GCGATTCAAATACATCTTTTTAAGCTATAACAATGAAGGGCTTATGAGTGAAACAGAGATTGGAAATATTTTAAAAAAAT ACGGCGCTTACTCCTTAATGACCAAAACTTACATGCGTTTTAAAGCGGATAACAAACGTGCCCATAAAGCCGCGCACACC AAAGAGTGTTTGCATACTCTTATCAAATAA
Upstream 100 bases:
>100_bases AAACTTGTAATGATAGGATATTTAATGAAGGGTATCAAAAAGGTTATGGTGAGGGGTATCAAATCGGATACCATCAAAAA ACTACTTTATAACGGTTGCA
Downstream 100 bases:
>100_bases GAGTCAAAATAGCCCAACCTTTAAATGGCAAAAATAATCGCTTAAATACCGCTTGAATAAGGTAAAATGAATCCAAAATA AGCCTATAAAAAAGGGGAAA
Product: type II adenine specific DNA methyltransferase
Products: NA
Alternate protein names: M.NlaIII; Adenine-specific methyltransferase NlaIII [H]
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MNYIGSKYKLIPFIKENIHAVVGDNLSGAIFCDLFAGTGIVGRAFKKAVNKVISNDLEYYSFVLNQNYIGNIQEIPNQEE LIDRLNSVALKKGFIHSHYSLGGSSRQYFSETNAQKIDAMRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYG AFLKRLKKSAQKELILKGAHFDVSLNANEVYQQDSSELIGKISGDILYLDPPYNARQYGANYHLLNTIAIYTPFAPKGKT GLPSYQKSSFCSRAKILNAFENLIKKSRFKYIFLSYNNEGLMSETEIGNILKKYGAYSLMTKTYMRFKADNKRAHKAAHT KECLHTLIK
Sequences:
>Translated_329_residues MNYIGSKYKLIPFIKENIHAVVGDNLSGAIFCDLFAGTGIVGRAFKKAVNKVISNDLEYYSFVLNQNYIGNIQEIPNQEE LIDRLNSVALKKGFIHSHYSLGGSSRQYFSETNAQKIDAMRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYG AFLKRLKKSAQKELILKGAHFDVSLNANEVYQQDSSELIGKISGDILYLDPPYNARQYGANYHLLNTIAIYTPFAPKGKT GLPSYQKSSFCSRAKILNAFENLIKKSRFKYIFLSYNNEGLMSETEIGNILKKYGAYSLMTKTYMRFKADNKRAHKAAHT KECLHTLIK >Mature_329_residues MNYIGSKYKLIPFIKENIHAVVGDNLSGAIFCDLFAGTGIVGRAFKKAVNKVISNDLEYYSFVLNQNYIGNIQEIPNQEE LIDRLNSVALKKGFIHSHYSLGGSSRQYFSETNAQKIDAMRLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYG AFLKRLKKSAQKELILKGAHFDVSLNANEVYQQDSSELIGKISGDILYLDPPYNARQYGANYHLLNTIAIYTPFAPKGKT GLPSYQKSSFCSRAKILNAFENLIKKSRFKYIFLSYNNEGLMSETEIGNILKKYGAYSLMTKTYMRFKADNKRAHKAAHT KECLHTLIK
Specific function: This methylase recognizes the double-stranded sequence CATG, causes specific methylation on A-2 on both strands and protects the DNA from cleavage by the NlaIII endonuclease [H]
COG id: COG3392
COG function: function code L; Adenine-specific DNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR012327 [H]
Pfam domain/function: PF02086 MethyltransfD12 [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 37139; Mature: 37139
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYIGSKYKLIPFIKENIHAVVGDNLSGAIFCDLFAGTGIVGRAFKKAVNKVISNDLEYY CCCCCCCEEEHHHHHHCHHEEECCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHCCHHHH SFVLNQNYIGNIQEIPNQEELIDRLNSVALKKGFIHSHYSLGGSSRQYFSETNAQKIDAM HHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHH RLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYGAFLKRLKKSAQKELILKGAH HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC FDVSLNANEVYQQDSSELIGKISGDILYLDPPYNARQYGANYHLLNTIAIYTPFAPKGKT EEEECCHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHCCCEEEEEEEEEECCCCCCCCC GLPSYQKSSFCSRAKILNAFENLIKKSRFKYIFLSYNNEGLMSETEIGNILKKYGAYSLM CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHH TKTYMRFKADNKRAHKAAHTKECLHTLIK HHHHHHHCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNYIGSKYKLIPFIKENIHAVVGDNLSGAIFCDLFAGTGIVGRAFKKAVNKVISNDLEYY CCCCCCCEEEHHHHHHCHHEEECCCCCCCEEEEHHHCCCHHHHHHHHHHHHHHHCCHHHH SFVLNQNYIGNIQEIPNQEELIDRLNSVALKKGFIHSHYSLGGSSRQYFSETNAQKIDAM HHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHH RLKIEELKLSQNIDNCAYYFLLASLLESADKVANTASVYGAFLKRLKKSAQKELILKGAH HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC FDVSLNANEVYQQDSSELIGKISGDILYLDPPYNARQYGANYHLLNTIAIYTPFAPKGKT EEEECCHHHHHHCCHHHHHHHCCCCEEEECCCCCHHHHCCCEEEEEEEEEECCCCCCCCC GLPSYQKSSFCSRAKILNAFENLIKKSRFKYIFLSYNNEGLMSETEIGNILKKYGAYSLM CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHH TKTYMRFKADNKRAHKAAHTKECLHTLIK HHHHHHHCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2277628 [H]