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The map label for this gene is ompA [H]

Identifier: 108563489

GI number: 108563489

Start: 1120566

End: 1121105

Strand: Reverse

Name: ompA [H]

Synonym: HPAG1_1064

Alternate gene names: 108563489

Gene position: 1121105-1120566 (Counterclockwise)

Preceding gene: 108563490

Following gene: 108563488

Centisome position: 70.23

GC content: 39.63

Gene sequence:

>540_bases
ATGAAGAGATCTTCTGTATTTAGTTCCTTGGTAGCTTTTTTATTGGTAGCTGGCTGTAGTCATAAAATGGATAATAAGAC
TGTGGCTGGCGATGTGAGTGCTAAAACGGTTCAGACTGCACCTGTTACTACAGAACCAGCTCCAGAGAAAGAAGAGCCTA
AACAAGAGCCAGCTCCAGTGGTTGAAGAAAAGCCGGCTGTTGAGAGCGGGACTATCATCGCTTCTATTTATTTTGATTTT
GACAAGTATGAAATCAAAGAATCCGATCAAGAGACTTTAGATGAGATCGTGCAAAAAGCTAAAGAAAACCACATGCAAGT
GCTTTTGGAAGGCAATACCGATGAATTTGGCTCTAGCGAATACAACCAAGCACTTGGCGTTAAAAGGACTTTGAGCGTGA
AAAACGCTTTAGTCATTAAAGGGGTAGAAAAAGATATGATCAAAACCATCAGTTTTGGTGAAACCAAACCCAAATGCACC
CAAAAAACTAGAGAATGTTACAAAGAAAACAGAAGAGTGGATGTCAAATTAGTGAAGTAA

Upstream 100 bases:

>100_bases
AAAGAATGTGAAAATACAAGCCTTTGATTGGTAAGGTTAAATTAAGCGAATGTGAGTTAATATTGACACTTATTAAAATT
TGATTCTTGGAGAATTTATA

Downstream 100 bases:

>100_bases
TTCTAGGATGAAAAGGCTTTTTTTTATCCCTTTTATCGCTCCTTTTTTTCTCAATGGGGAACCTTCAGCGTTTGATTTGC
AAAGCGGAGCCACCAAAAAA

Product: peptidoglycan-associated lipoprotein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKRSSVFSSLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF
DKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGETKPKCT
QKTRECYKENRRVDVKLVK

Sequences:

>Translated_179_residues
MKRSSVFSSLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF
DKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGETKPKCT
QKTRECYKENRRVDVKLVK
>Mature_179_residues
MKRSSVFSSLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF
DKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGETKPKCT
QKTRECYKENRRVDVKLVK

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=38.7755102040816, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19916; Mature: 19916

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSSVFSSLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPV
CCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
VEEKPAVESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSE
CCCCCCCCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCH
YNQALGVKRTLSVKNALVIKGVEKDMIKTISFGETKPKCTQKTRECYKENRRVDVKLVK
HHHHHCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
>Mature Secondary Structure
MKRSSVFSSLVAFLLVAGCSHKMDNKTVAGDVSAKTVQTAPVTTEPAPEKEEPKQEPAPV
CCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
VEEKPAVESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSE
CCCCCCCCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCH
YNQALGVKRTLSVKNALVIKGVEKDMIKTISFGETKPKCTQKTRECYKENRRVDVKLVK
HHHHHCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]