Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

Click here to switch to the map view.

The map label for this gene is 108563395

Identifier: 108563395

GI number: 108563395

Start: 1020454

End: 1020699

Strand: Direct

Name: 108563395

Synonym: HPAG1_0970

Alternate gene names: NA

Gene position: 1020454-1020699 (Clockwise)

Preceding gene: 108563394

Following gene: 108563396

Centisome position: 63.92

GC content: 35.37

Gene sequence:

>246_bases
ATGGGTTTTCAAAACGAAAATAAGTTAGAGTTAGGCGCGTCAGTCAAAGCCACAATCAATAACAAAGTGGTGGAGGCTAA
AGTCATTAATATTAGGTTTAATCGTGTAACTTTAAGGAGCCAAAAAGGCAACGAAGCCACTTATGTTTTCAATAGCGATA
AATTCTTAAAATGGTTTAAGGAAGTTCCTTTAAATGAAGTTGCGAATAATCACGCTGAAAAAAGCGGACATTTTAGATGG
CGTTAA

Upstream 100 bases:

>100_bases
AAGGAGGAACAAGCCATGCCAAAAAGATAAAAACATTAAAAAAACATTGAACGACCGATTATAGCGGAATTTAAAACAAA
TTTTTACCAAGGAGTATTTT

Downstream 100 bases:

>100_bases
AGTGGTAACTAGCGGTCCGAGTGTCAAGGAAAGGACTACCACTGCTAAAGAGAAAGAAAGCAAATTCAAATTGGACTTTG
ATTTCCCTGATGATACCACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MGFQNENKLELGASVKATINNKVVEAKVINIRFNRVTLRSQKGNEATYVFNSDKFLKWFKEVPLNEVANNHAEKSGHFRW
R

Sequences:

>Translated_81_residues
MGFQNENKLELGASVKATINNKVVEAKVINIRFNRVTLRSQKGNEATYVFNSDKFLKWFKEVPLNEVANNHAEKSGHFRW
R
>Mature_80_residues
GFQNENKLELGASVKATINNKVVEAKVINIRFNRVTLRSQKGNEATYVFNSDKFLKWFKEVPLNEVANNHAEKSGHFRWR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9409; Mature: 9278

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFQNENKLELGASVKATINNKVVEAKVINIRFNRVTLRSQKGNEATYVFNSDKFLKWFK
CCCCCCCCEEECCEEEEECCCEEEEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHH
EVPLNEVANNHAEKSGHFRWR
HCCHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GFQNENKLELGASVKATINNKVVEAKVINIRFNRVTLRSQKGNEATYVFNSDKFLKWFK
CCCCCCCEEECCEEEEECCCEEEEEEEEEEEEEEEEEECCCCCCEEEEECCHHHHHHHH
EVPLNEVANNHAEKSGHFRWR
HCCHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA