Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108563394

Identifier: 108563394

GI number: 108563394

Start: 1018474

End: 1020303

Strand: Direct

Name: 108563394

Synonym: HPAG1_0969

Alternate gene names: NA

Gene position: 1018474-1020303 (Clockwise)

Preceding gene: 108563393

Following gene: 108563395

Centisome position: 63.8

GC content: 37.16

Gene sequence:

>1830_bases
ATGGAATTGTTAAATTTAGACGGAGTGATTGAAAAAGGCATGTTTGAAATCCCTAGCTATCAAAGGGGGTATGCATGGCA
AATAAGGCAATTAAAGGATTTTTGGAACGATTTAGAGCATGTGTCCAAACTGGGAGATAAATTCCATTACATGCATAGCT
TAACCTTAAGAGAGTCTGAAAATGAGCTTGAAAGCAGCGCTTTTGAAATCATAGACGGCCAACAACGATTGGCTACAAGC
CTGATTTTACTGGGCCTTTTAGCAAAAACCACCCAAAACAAAGACCCAAAGTATTCTTTAATCAACCTTGAACCCGTTCT
ATCCTATAAGTATTATGGTTTGAGTGAAGTTTTTAGGGCGATCACTGAAGAAGAAAAAAATTTAAAAGCGTTCAAAACTT
CTTTTTACGCTAAAAATTTGATTGACGCTCATGCGTTTTTTAAAGAAAAAATCAGCGATACGCCTGTTGGAACGCTTGAA
AAAATGTTTGATGCCCTTATAAAGAAAATGCTTTTTAGCGTGGTGGGATTGAACGATAACCGAATCGATCCGTTCAGTTC
TTTTGAAACGATTAACAATCGTGGTAAGGATCTATCCACTTTGGAATTGTTAAAAAACCGCTTGCATTTTGTGGCGCACA
AGATTTGTAATGGACAAAAATTAGAAACACTTCAAAACGAAATCAATGACACCTACACCAGGATTTATTACGATTTGAGG
CAGTTTGAAGACACTCATTTAGATGGCTTTTTAAAGCATTTCGTGGAGTATTATTATGGCGAGAAAGGGGATTTTAAAAA
GAGGTTATTGGAGATGGAGTTTAACGCTCATCAAAGATATACCGACAACACCAACTTTAATGAGGAATATGAAAAAATAG
ATGATTTGTTGTTTTATCTTTCTTATTCTTCTAAAGTTTGGAATTTCTTGCACACGCTTGATGAAAAATCTATCACCCTT
ATTGTTGATGACAATAAAAAACTTGAGATTGAAATCACGCCTAAAATGCGCAACTTGTTAGAAAAGATGCGACGACTAAA
CGCTTTGAGCGAAAACGCTTTTTTACCCTTATTGCTCTCTCTTTTAACCATACAGCTTGTTGGAAGAAGCGCTAATGAAC
AGCCTTATACCACCCAAGAATTAGAGGGCTTATTAGAGTATTTAGAGCGTTTCGGGTTTTTAGTCTATGGGGTTGCTGGC
AAGAATACGGCTAAACATGAATGGATTGAATTGGCTTTTATAGCGTTCAGAGCGTTCAGATATGGGGAAGAAAATATCGC
CATTGAAGATCTTCCAACGCTAGAAAAGAGTTTTTTCAAGGGCAAGTATAGCGGCTTGGAATTGCTTGAAGAGAGTATCC
ATTCCAAAAAGAATACTGAAAAATGGTATCAGTGGGGCAAGGCATTGAATTACTTGCTTTATGAATACGAGTTGCACCAT
AACCCTGAAACGACTCTGAATTTTGATAGCAGTATAGAAAGCATTGAGCATATCTTGCCCCAAAATCCCGATCAAGGCTA
TAGCGCTAAAGAAAAAAGTTGGGCTAAAAACCCTAACATCGTGCATGCTTTAGGGAACTTGCTCTTAATCCCTAAAAACG
CTAACAGCTCTTTAAGCAACAAGCCTTTTGAGGAAAAAAGAAAGCAATACCTCAAAGGCTCTTATAGCGAAAAAGAAGTG
GCTAAAAACGCTTCTTTTGGAGTCGCGCAAATCAAAGAAAGGAGCGAAAAATTATTAGAATTTTTAATCGCGCATTATCG
TATCGCTGAATTGGTGGGTGAAAGCGCCATTAAAGCTTTTAAAAACGCTCTTTTAAAAGAGATCAAATGA

Upstream 100 bases:

>100_bases
TGGCATTTCACGCACAGCACTAGGCTTGGGCAACCAAAATTGATTGAGCGAAAAAATTAAGGGTTATGGGTTTTACCCAT
AAACCTATGAAAGGATTTTA

Downstream 100 bases:

>100_bases
TGCGATCACTTAAAAATAAGGGGGCGTTTAAAAAACACCCACCCCACAACAAGGAGGAACAAGCCATGCCAAAAAGATAA
AAACATTAAAAAAACATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESENELESSAFEIIDGQQRLATS
LILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRAITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLE
KMFDALIKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR
QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSITL
IVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAG
KNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH
NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKEV
AKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK

Sequences:

>Translated_609_residues
MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESENELESSAFEIIDGQQRLATS
LILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRAITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLE
KMFDALIKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR
QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSITL
IVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAG
KNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH
NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKEV
AKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK
>Mature_609_residues
MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESENELESSAFEIIDGQQRLATS
LILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRAITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLE
KMFDALIKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR
QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSITL
IVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAG
KNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH
NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKEV
AKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK

Specific function: Unknown

COG id: COG1479

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71045; Mature: 71045

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESE
CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
NELESSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH
ITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLEKMFDALIKKMLFSVVGLNDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
SYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLS
HHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAFR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
YGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH
CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECC
NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSN
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCCC
KPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAF
CCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNALLKEIK
HHHHHHHCC
>Mature Secondary Structure
MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESE
CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
NELESSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH
ITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLEKMFDALIKKMLFSVVGLNDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
SYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLS
HHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAFR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
YGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH
CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECC
NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSN
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCCC
KPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAF
CCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNALLKEIK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA