Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563394
Identifier: 108563394
GI number: 108563394
Start: 1018474
End: 1020303
Strand: Direct
Name: 108563394
Synonym: HPAG1_0969
Alternate gene names: NA
Gene position: 1018474-1020303 (Clockwise)
Preceding gene: 108563393
Following gene: 108563395
Centisome position: 63.8
GC content: 37.16
Gene sequence:
>1830_bases ATGGAATTGTTAAATTTAGACGGAGTGATTGAAAAAGGCATGTTTGAAATCCCTAGCTATCAAAGGGGGTATGCATGGCA AATAAGGCAATTAAAGGATTTTTGGAACGATTTAGAGCATGTGTCCAAACTGGGAGATAAATTCCATTACATGCATAGCT TAACCTTAAGAGAGTCTGAAAATGAGCTTGAAAGCAGCGCTTTTGAAATCATAGACGGCCAACAACGATTGGCTACAAGC CTGATTTTACTGGGCCTTTTAGCAAAAACCACCCAAAACAAAGACCCAAAGTATTCTTTAATCAACCTTGAACCCGTTCT ATCCTATAAGTATTATGGTTTGAGTGAAGTTTTTAGGGCGATCACTGAAGAAGAAAAAAATTTAAAAGCGTTCAAAACTT CTTTTTACGCTAAAAATTTGATTGACGCTCATGCGTTTTTTAAAGAAAAAATCAGCGATACGCCTGTTGGAACGCTTGAA AAAATGTTTGATGCCCTTATAAAGAAAATGCTTTTTAGCGTGGTGGGATTGAACGATAACCGAATCGATCCGTTCAGTTC TTTTGAAACGATTAACAATCGTGGTAAGGATCTATCCACTTTGGAATTGTTAAAAAACCGCTTGCATTTTGTGGCGCACA AGATTTGTAATGGACAAAAATTAGAAACACTTCAAAACGAAATCAATGACACCTACACCAGGATTTATTACGATTTGAGG CAGTTTGAAGACACTCATTTAGATGGCTTTTTAAAGCATTTCGTGGAGTATTATTATGGCGAGAAAGGGGATTTTAAAAA GAGGTTATTGGAGATGGAGTTTAACGCTCATCAAAGATATACCGACAACACCAACTTTAATGAGGAATATGAAAAAATAG ATGATTTGTTGTTTTATCTTTCTTATTCTTCTAAAGTTTGGAATTTCTTGCACACGCTTGATGAAAAATCTATCACCCTT ATTGTTGATGACAATAAAAAACTTGAGATTGAAATCACGCCTAAAATGCGCAACTTGTTAGAAAAGATGCGACGACTAAA CGCTTTGAGCGAAAACGCTTTTTTACCCTTATTGCTCTCTCTTTTAACCATACAGCTTGTTGGAAGAAGCGCTAATGAAC AGCCTTATACCACCCAAGAATTAGAGGGCTTATTAGAGTATTTAGAGCGTTTCGGGTTTTTAGTCTATGGGGTTGCTGGC AAGAATACGGCTAAACATGAATGGATTGAATTGGCTTTTATAGCGTTCAGAGCGTTCAGATATGGGGAAGAAAATATCGC CATTGAAGATCTTCCAACGCTAGAAAAGAGTTTTTTCAAGGGCAAGTATAGCGGCTTGGAATTGCTTGAAGAGAGTATCC ATTCCAAAAAGAATACTGAAAAATGGTATCAGTGGGGCAAGGCATTGAATTACTTGCTTTATGAATACGAGTTGCACCAT AACCCTGAAACGACTCTGAATTTTGATAGCAGTATAGAAAGCATTGAGCATATCTTGCCCCAAAATCCCGATCAAGGCTA TAGCGCTAAAGAAAAAAGTTGGGCTAAAAACCCTAACATCGTGCATGCTTTAGGGAACTTGCTCTTAATCCCTAAAAACG CTAACAGCTCTTTAAGCAACAAGCCTTTTGAGGAAAAAAGAAAGCAATACCTCAAAGGCTCTTATAGCGAAAAAGAAGTG GCTAAAAACGCTTCTTTTGGAGTCGCGCAAATCAAAGAAAGGAGCGAAAAATTATTAGAATTTTTAATCGCGCATTATCG TATCGCTGAATTGGTGGGTGAAAGCGCCATTAAAGCTTTTAAAAACGCTCTTTTAAAAGAGATCAAATGA
Upstream 100 bases:
>100_bases TGGCATTTCACGCACAGCACTAGGCTTGGGCAACCAAAATTGATTGAGCGAAAAAATTAAGGGTTATGGGTTTTACCCAT AAACCTATGAAAGGATTTTA
Downstream 100 bases:
>100_bases TGCGATCACTTAAAAATAAGGGGGCGTTTAAAAAACACCCACCCCACAACAAGGAGGAACAAGCCATGCCAAAAAGATAA AAACATTAAAAAAACATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 609; Mature: 609
Protein sequence:
>609_residues MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESENELESSAFEIIDGQQRLATS LILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRAITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLE KMFDALIKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSITL IVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAG KNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKEV AKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK
Sequences:
>Translated_609_residues MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESENELESSAFEIIDGQQRLATS LILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRAITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLE KMFDALIKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSITL IVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAG KNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKEV AKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK >Mature_609_residues MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESENELESSAFEIIDGQQRLATS LILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRAITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLE KMFDALIKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSITL IVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAG KNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKEV AKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71045; Mature: 71045
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESE CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH NELESSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRA HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH ITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLEKMFDALIKKMLFSVVGLNDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC RIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYL HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH SYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLS HHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHH LLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAFR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH YGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECC NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSN CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCCC KPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAF CCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNALLKEIK HHHHHHHCC >Mature Secondary Structure MELLNLDGVIEKGMFEIPSYQRGYAWQIRQLKDFWNDLEHVSKLGDKFHYMHSLTLRESE CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH NELESSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSLINLEPVLSYKYYGLSEVFRA HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH ITEEEKNLKAFKTSFYAKNLIDAHAFFKEKISDTPVGTLEKMFDALIKKMLFSVVGLNDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC RIDPFSSFETINNRGKDLSTLELLKNRLHFVAHKICNGQKLETLQNEINDTYTRIYYDLR CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYL HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH SYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLS HHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHH LLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAFR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH YGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELHH CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECC NPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSN CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCCC KPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAF CCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNALLKEIK HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA