Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563231
Identifier: 108563231
GI number: 108563231
Start: 840982
End: 841443
Strand: Direct
Name: 108563231
Synonym: HPAG1_0806
Alternate gene names: NA
Gene position: 840982-841443 (Clockwise)
Preceding gene: 108563230
Following gene: 108563232
Centisome position: 52.68
GC content: 35.28
Gene sequence:
>462_bases ATGAAACAAAATATTTTCTCCTTACTCATTCAAAAAAAGTCTTATAAAAAGCTTGAAACCCTTTTGAAACTCAAAAAGCT TAAGGTTTTTATGCCTTTAAGTTTACAAGAAAATTTGCTTTTTATCTTCATAAAAGACTCTAAATTGCTTTTTGCGTTTA AAGATCTTTGGGCTTCTAAGGAATTTAACCAGCGATTCGCTAAAGAAATCAGCCATTTTTTGAACACGCAAGGGCATGTT TATGGGTTTGACGGGTTGAATGGGTTAGAAATTTTAGGTTATGTGCCTAAAGACGCGCTAAAAAAAGCCAATTTTTATGC CCCCATTAAAAAACAAGCCCGTTTTTTTCGCCCTAGCGCTTTAGGGTTGTTCCATAACCCCATTAAAGACGCTCGTTTGC ATGAATGTTTTGAAAAAGCGCGTTCTTTGATCCGCTACCAACGAAGTTTTTTTGAGGAATGA
Upstream 100 bases:
>100_bases AAGTTTTTTTAGCGGGTTTTTCATTGAATGGAGGGGCTTTATAGCCACAAGCTTGAATCGTTATCGCTACAAGCGTTAAA AAGCATGTTAAGATTAGTTT
Downstream 100 bases:
>100_bases ATGGCTGATTTATTGTCCAGTTTGAAAAACCTTTCTCATAGCAGTGGGGTGTATCAATATTTTGATAAAAACCGCCAATT ACTCTATATCGGTAAGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MKQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASKEFNQRFAKEISHFLNTQGHV YGFDGLNGLEILGYVPKDALKKANFYAPIKKQARFFRPSALGLFHNPIKDARLHECFEKARSLIRYQRSFFEE
Sequences:
>Translated_153_residues MKQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASKEFNQRFAKEISHFLNTQGHV YGFDGLNGLEILGYVPKDALKKANFYAPIKKQARFFRPSALGLFHNPIKDARLHECFEKARSLIRYQRSFFEE >Mature_153_residues MKQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASKEFNQRFAKEISHFLNTQGHV YGFDGLNGLEILGYVPKDALKKANFYAPIKKQARFFRPSALGLFHNPIKDARLHECFEKARSLIRYQRSFFEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18098; Mature: 18098
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCH EFNQRFAKEISHFLNTQGHVYGFDGLNGLEILGYVPKDALKKANFYAPIKKQARFFRPSA HHHHHHHHHHHHHHCCCCCEEECCCCCHHHHEEECCHHHHHHCCCCCCHHHHHHHCCCHH LGLFHNPIKDARLHECFEKARSLIRYQRSFFEE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCH EFNQRFAKEISHFLNTQGHVYGFDGLNGLEILGYVPKDALKKANFYAPIKKQARFFRPSA HHHHHHHHHHHHHHCCCCCEEECCCCCHHHHEEECCHHHHHHCCCCCCHHHHHHHCCCHH LGLFHNPIKDARLHECFEKARSLIRYQRSFFEE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA