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The map label for this gene is dapB [H]

Identifier: 108562909

GI number: 108562909

Start: 502317

End: 503081

Strand: Direct

Name: dapB [H]

Synonym: HPAG1_0484

Alternate gene names: 108562909

Gene position: 502317-503081 (Clockwise)

Preceding gene: 108562908

Following gene: 108562910

Centisome position: 31.47

GC content: 41.7

Gene sequence:

>765_bases
ATGAAAATCGGTGTTTATGGAGCGAGCGGTCGTATAGGGAAACTGCTTTTAGAAGAATTAAAAGGGGGGTATAAGGGATT
AGCACTATCTAGCGTGTTTGTCAGGCAAAAATGCGAAACGGATTTTAGCCATTTTTCGCACTCCCCTTTAGTAACCAATG
ATTTAAAAGCGTTTGTGAGGGCATGCGAATGCGTGATTGATTTTTCTTTACCTAAAGGCCTGGATCATTTGCTAGAGGCT
CTTTTAGAATGCCCTAAAATTTTAGTTTCTGGCACAACCGGTTTAGAAAAAGAAACGCTAGAAAAAATGCAACAATTAGC
CTTAAGAGTGCCGCTTTTGCATGCGCACAACATGTCTTTAGGGATTATGATGTTCAACCAATTAGCTTTTTTAGCTTCTT
TGAAATTAAAAGATGCGGATATTGAAATTGTAGAAACGCACCACAATCTTAAAAAAGATGCCCCAAGCGGCACTGCATTG
AGTTTGTATGAAACTTGCGCTAAGGCTAGGGGGTATGATGAAAAAAACGCTCTCACCACTCACAGAGAAGGTTTGCGCTC
TAAAGAAAGCATTGGCATAGCCGCTTTAAGGGGGGGCGATGTCGCCGGGAAGCACACGATAGGGTTTTATTTAGAGGGCG
AATACATAGAGCTTAGCCATACGGCGACTAACCGCTCTATTTTTGCTAAAGGGGCTTTAGAAGTGGCTCTGTGGCTTAAA
GATAAGGCCGCTAAAAAATATGAAATCAACGAGATGTTTGGTTGA

Upstream 100 bases:

>100_bases
GAAATGGAGCTTTTTAGGAACATTAAAAAAGCCCTTGATCCTAATAATATTTTAAACCCTTTTAAAATGGGGCTATAAAA
TTTAAAAGCAAGGAAAGCGC

Downstream 100 bases:

>100_bases
ATGTTTAATTCTTTGCTGTATTGGAAGAGTTTATTTTGTAAGGATTGATCTTGCCTTGTGTGATTAGTAACACAAGGCAA
GTGTGATAAACCCTACTACA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKIGVYGASGRIGKLLLEELKGGYKGLALSSVFVRQKCETDFSHFSHSPLVTNDLKAFVRACECVIDFSLPKGLDHLLEA
LLECPKILVSGTTGLEKETLEKMQQLALRVPLLHAHNMSLGIMMFNQLAFLASLKLKDADIEIVETHHNLKKDAPSGTAL
SLYETCAKARGYDEKNALTTHREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLK
DKAAKKYEINEMFG

Sequences:

>Translated_254_residues
MKIGVYGASGRIGKLLLEELKGGYKGLALSSVFVRQKCETDFSHFSHSPLVTNDLKAFVRACECVIDFSLPKGLDHLLEA
LLECPKILVSGTTGLEKETLEKMQQLALRVPLLHAHNMSLGIMMFNQLAFLASLKLKDADIEIVETHHNLKKDAPSGTAL
SLYETCAKARGYDEKNALTTHREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLK
DKAAKKYEINEMFG
>Mature_254_residues
MKIGVYGASGRIGKLLLEELKGGYKGLALSSVFVRQKCETDFSHFSHSPLVTNDLKAFVRACECVIDFSLPKGLDHLLEA
LLECPKILVSGTTGLEKETLEKMQQLALRVPLLHAHNMSLGIMMFNQLAFLASLKLKDADIEIVETHHNLKKDAPSGTAL
SLYETCAKARGYDEKNALTTHREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLK
DKAAKKYEINEMFG

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=264, Percent_Identity=31.4393939393939, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27923; Mature: 27923

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGVYGASGRIGKLLLEELKGGYKGLALSSVFVRQKCETDFSHFSHSPLVTNDLKAFVR
CEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ACECVIDFSLPKGLDHLLEALLECPKILVSGTTGLEKETLEKMQQLALRVPLLHAHNMSL
HHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCHHECCCCCH
GIMMFNQLAFLASLKLKDADIEIVETHHNLKKDAPSGTALSLYETCAKARGYDEKNALTT
HHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
HREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLK
HHHHCCCHHCCCEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCEEEECCCEEEEEEEH
DKAAKKYEINEMFG
HHCCCCCCHHHHCC
>Mature Secondary Structure
MKIGVYGASGRIGKLLLEELKGGYKGLALSSVFVRQKCETDFSHFSHSPLVTNDLKAFVR
CEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ACECVIDFSLPKGLDHLLEALLECPKILVSGTTGLEKETLEKMQQLALRVPLLHAHNMSL
HHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCHHECCCCCH
GIMMFNQLAFLASLKLKDADIEIVETHHNLKKDAPSGTALSLYETCAKARGYDEKNALTT
HHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
HREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLK
HHHHCCCHHCCCEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCEEEECCCEEEEEEEH
DKAAKKYEINEMFG
HHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA