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The map label for this gene is fliF [H]

Identifier: 108562771

GI number: 108562771

Start: 355101

End: 356804

Strand: Direct

Name: fliF [H]

Synonym: HPAG1_0346

Alternate gene names: 108562771

Gene position: 355101-356804 (Clockwise)

Preceding gene: 108562770

Following gene: 108562772

Centisome position: 22.24

GC content: 39.38

Gene sequence:

>1704_bases
TTGGATTTAAAGGTATTATTGCAACGGATTGTTGATTTTTTCATCAAACTCAATAAAAAGCAAAAAATCGCTTTGATTGC
AGCTGGGGTTTTAATCACCGCTTTGCTCGTGTTTTTATTGCTCTATCCCTTTAAAGAAAAAGACTACACGCAAGGGGGCT
ATGGGGTTTTATTTGAAGGCTTAGACTCTAGCGATAACGCTTTAATCTTACAGCACCTCCAGCAAAACCAAATCCCTTAT
AAAGTCTCCAAAGATGACACCATTCTTATCCCTAAAGATAAAGTGTATGAAGAAAGGATCACTTTGGCTTCTCAAGGGAT
CCCTAAAACGAGTAAAGTGGGCTTTGAAATCTTTGACACTAAAGACTTTGGAGCGACTGATTTTGATCAAAATATCAAAC
TCATTCGCGCCATTGAGGGGGAATTGTCGCGCACGATTGAAAGTTTAAACCCCATTTTGAAAGCCAATGTGCATATTGCA
ATCCCTAAAGACAGCGTGTTTGTGGCTAAAGAAGTCCCTCCTAGCGCTTCGGTGATGCTCAAACTCAAGCCTGACATGAA
GCTTTCACCCACTCAAATTTTAGGGATTAAAAATTTAATCGCTGCAGCTGTGCCTAAACTCACGATAGAAAATGTGAAAA
TCGTGAATGAAAACGGCGAATCAATAGGCGAGGGCGATATATTAGAAAACTCCAAAGAATTAGCCCTAGAGCAATTGCAT
TACAAACAAAATTTTGAAAACATTTTAGAAAATAAGATTGTCAATATCTTAGCCCCTATTGTGGGGGGTAAAAACAAGGT
GGTCGCAAGGGTCAATGCGGAGTTTGATTTCAGCCAAAAGAAAAGCACTAAAGAGACTTTTGATCCCAATAATGTCGTAA
GGAGCGAGCAAAATTTAGAAGAAAAAAAAGAAGGCGCTCCTAAAAAACAAGTCGGCGGCGTGCCTGGGGTTGTGAGTAAT
ATTGGGCCTGTGCAAGGATTGAAAGACAATAAAGAGCCAGAAAAATACGAAAAATCTCAAAACACGACCAATTATGAAGT
GGGTAAAACCATTAGCGAGATTAAGGGCGAGTTTGGCACTTTAGTGCGTTTGAATGCGGCGGTTGTGGTGGATGGCAAGT
ATAAAATCGCGCTTAAAGATGGGGCAAACACTTTAGAATACGAGCCTTTGAGCGATGAATCGCTTCAAAAAATCAACGCT
CTAGTGAAACAAGCCATTGGCTATAATCAAAATAGAGGCGATGATGTGGCGGTGAGTAATTTTGAGTTTAACCCTATGGC
ACCCATGCTTGATAACGCCACTTTGAGCGAAAAAATCATGCACAAGACTCAAAAAATCTTAGGCTCATTCACGCCCTTAA
TCAAGTATGTTTTAGTGTTTATAGTGCTATTTATTTTCTATAAAAAAGTGATTGTGCCTTTCAGCGAACGCATGCTTGAA
GTGGTGCCTGATGAAGATAAGGAAGTGAAATCCATGTTTGAAGAAATGGATGAAGAAGAAGATGAATTGAACAAATTGGG
CGATTTGAGAAAAAAAGTGGAAGATCAATTAGGGCTTAATGCAACCTTTAGCGAAGAAGAAGTAAGATACGAAATTATCT
TAGAAAAGATTAGAGGGACTCTTAAAGAACGCCCTGATGAAATCGCCATGCTCTTTAAACTCCTAATCAAAGATGAAATC
TCTTCAGACAGCGCGAAAGGCTAA

Upstream 100 bases:

>100_bases
GCGTTAGGGGCTTGTTTTTCCATAGGGATTTATTTGAGCGTGTTCCAAAAGATCTAAGCGAACGGCTTAAAAGAATGAAA
ATTTTATCAAGGTTTTAATA

Downstream 100 bases:

>100_bases
AAGATAAAAGGTTAAAAATGGCAACCAAGCTTACCCCCAAACAAAAGGCTCAATTAGACGAACTTTCCATGAGTGAAAAA
ATCGCTATTTTACTCATTCA

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPY
KVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINA
LVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEI
SSDSAKG

Sequences:

>Translated_567_residues
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPY
KVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINA
LVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEI
SSDSAKG
>Mature_567_residues
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPY
KVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINA
LVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEI
SSDSAKG

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=584, Percent_Identity=31.3356164383562, Blast_Score=245, Evalue=6e-66,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 63523; Mature: 63523

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG
CCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
LDSSDNALILQHLQQNQIPYKVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDT
CCCCCCHHHHHHHHHCCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
KDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCCCEEEEECCCCCCEEEE
KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH
EECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCHHCCHHHHHHHHHH
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHH
EKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGT
HHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCC
LVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSN
EEEEEEEEEECCEEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
FEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGT
HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LKERPDEIAMLFKLLIKDEISSDSAKG
HHCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG
CCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
LDSSDNALILQHLQQNQIPYKVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDT
CCCCCCHHHHHHHHHCCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
KDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCCCEEEEECCCCCCEEEE
KLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLH
EECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCHHCCHHHHHHHHHH
YKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHH
EKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGT
HHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCC
LVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSN
EEEEEEEEEECCEEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
FEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGT
HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LKERPDEIAMLFKLLIKDEISSDSAKG
HHCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 1551848; 8224881 [H]