Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108562755
Identifier: 108562755
GI number: 108562755
Start: 341632
End: 342507
Strand: Direct
Name: 108562755
Synonym: HPAG1_0330
Alternate gene names: NA
Gene position: 341632-342507 (Clockwise)
Preceding gene: 108562754
Following gene: 108562756
Centisome position: 21.4
GC content: 36.64
Gene sequence:
>876_bases ATGCCAGTAAAAATTTTGTGCGATTGTTTTTTAACAAGCGGTTTAGGGCATGTGAGGCGTTGTGAAAAAATCCTTTCTTT TATAGAAAAATTAGGAGTTAAAGTGGATCTTTATTCACACAAGCAAAATAATATAAGCGCTTTTTTAGAGGGTGTTGGCA ATGATGATTTTTTGATTACAGACAGCTATTGTTTAAATTCAAAGGATTTTTATCTTTTAAAAGAAAAAGCCAAAAGCCTT ATGGTGATAGAAGATGAAGAGCATGCTAAGGGGTTTTACCCTAAAAATACTAAGATCATGAATTTCACGCTGAACGCCTT AAAACACTATAACCATGCGTCTAAAGATCATTATTTGGGGGTGGGGTTTTACCCTGTTGATATTCGCTTTGTCTATGAGC GCCCTATTAATACAGAAAATAAAGAAGTGCTGATCACTCTAGGGGGGAGCGAGCAAAAAACGCTCAAAACGCTCAAAGAG ATAGTCAAAATTTTAGAAAATAAGGGCATGCATTTGCATATCATTTCACCTCATACCCCTAAAAATCCTCCCAAAAACAC GCATTATTACAGCCCTTTAAGCCCTTTAGAGTTCAGTTCTTTGATGAAATTTTGCGCTTGCGCCATTAGCGCTGCAGGCC AAACCCTCTATGAATTGGCCCTTTCTCAAACGCCCTCTCTTATCCTTCCCATCGCTTCTAATCAAATCATTCAAAGCCAA GAATTTGAAAATTCAGGCATCTTCAAACAAACGAGTTTAAAAACTTTAGCTAGAGATTTTGAAAAATTACAAATTCAAAA AAATCAAGCTTGGGCAAAAACCCTAGCCTTTGGGAGTGAATTAGAGAGCGCATTAAGGGAGTTTTTAGAGATTTGA
Upstream 100 bases:
>100_bases ATTCCATCGCTTTAGAATTATCGCCCTTAGAAGTCCAAGACATTGACACTTTAGAAGATTTAGAATTAGCCAAGCTCAAA TACAGCCGTTTGAAAAACGC
Downstream 100 bases:
>100_bases AAAAAAATTATTCTTATGGAAATATCCAAGCGATTGATTTTACTAATTTAAACGATGGAGAAAAGTTGTTGGTTTTAGAA TTTCGCAACCACCCAAACAC
Product: CMP-N-acetylneuraminic acid synthetase
Products: diphosphate; CMP-N-acylneuraminate
Alternate protein names: FlmD Protein; CMP-Sialic Acid Synthetase NeuA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKVDLYSHKQNNISAFLEGVGNDDFLITDSYCLNSKDFYLLKEKAKSL MVIEDEEHAKGFYPKNTKIMNFTLNALKHYNHASKDHYLGVGFYPVDIRFVYERPINTENKEVLITLGGSEQKTLKTLKE IVKILENKGMHLHIISPHTPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLILPIASNQIIQSQ EFENSGIFKQTSLKTLARDFEKLQIQKNQAWAKTLAFGSELESALREFLEI
Sequences:
>Translated_291_residues MPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKVDLYSHKQNNISAFLEGVGNDDFLITDSYCLNSKDFYLLKEKAKSL MVIEDEEHAKGFYPKNTKIMNFTLNALKHYNHASKDHYLGVGFYPVDIRFVYERPINTENKEVLITLGGSEQKTLKTLKE IVKILENKGMHLHIISPHTPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLILPIASNQIIQSQ EFENSGIFKQTSLKTLARDFEKLQIQKNQAWAKTLAFGSELESALREFLEI >Mature_290_residues PVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKVDLYSHKQNNISAFLEGVGNDDFLITDSYCLNSKDFYLLKEKAKSLM VIEDEEHAKGFYPKNTKIMNFTLNALKHYNHASKDHYLGVGFYPVDIRFVYERPINTENKEVLITLGGSEQKTLKTLKEI VKILENKGMHLHIISPHTPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLILPIASNQIIQSQE FENSGIFKQTSLKTLARDFEKLQIQKNQAWAKTLAFGSELESALREFLEI
Specific function: Unknown
COG id: COG3980
COG function: function code M; Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.43
Molecular weight: Translated: 33028; Mature: 32896
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKVDLYSHKQNNISAFLEGVGNDDFLIT CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCEEEE DSYCLNSKDFYLLKEKAKSLMVIEDEEHAKGFYPKNTKIMNFTLNALKHYNHASKDHYLG CCEEECCCCEEEEECCCCCEEEEECCHHCCCCCCCCCEEEEHHHHHHHHCCCCCCCCEEE VGFYPVDIRFVYERPINTENKEVLITLGGSEQKTLKTLKEIVKILENKGMHLHIISPHTP EEEEEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC KNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLILPIASNQIIQSQ CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCC EFENSGIFKQTSLKTLARDFEKLQIQKNQAWAKTLAFGSELESALREFLEI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKVDLYSHKQNNISAFLEGVGNDDFLIT CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCEEEE DSYCLNSKDFYLLKEKAKSLMVIEDEEHAKGFYPKNTKIMNFTLNALKHYNHASKDHYLG CCEEECCCCEEEEECCCCCEEEEECCHHCCCCCCCCCEEEEHHHHHHHHCCCCCCCCEEE VGFYPVDIRFVYERPINTENKEVLITLGGSEQKTLKTLKEIVKILENKGMHLHIISPHTP EEEEEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC KNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLILPIASNQIIQSQ CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCC EFENSGIFKQTSLKTLARDFEKLQIQKNQAWAKTLAFGSELESALREFLEI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CTP; N-acylneuraminate
Specific reaction: CTP + N-acylneuraminate = diphosphate + CMP-N-acylneuraminate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA