Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108562698
Identifier: 108562698
GI number: 108562698
Start: 278146
End: 279129
Strand: Direct
Name: 108562698
Synonym: HPAG1_0273
Alternate gene names: NA
Gene position: 278146-279129 (Clockwise)
Preceding gene: 108562697
Following gene: 108562699
Centisome position: 17.42
GC content: 35.57
Gene sequence:
>984_bases GTGCTTAAAGGGTTAAAAAAAGCGTTCAAAGAGAGGTTTTGCTCTCAAGTGTATATCTCTTTTAATGTGGATCACAATCT TTTATCCACTCAAGTCATAAGGATCAAAAACGATCGCATTAAAGAGAAATTTTTTAAAACTTTTGAGACTAAAGTGGAGA CTAAAAATGGTGAAGTCCCCATTCAAGCCTTAAAAATCGCCAGAACTTATAGCCAAAAATACCCCTACACTTATTTTAGC GCGATGAGTAAAGCTAAAGAGGTTTTATGCGAAAAGCAGGCATTTGAACAAATCAAGCAAGAAAATCAAGATTATCAGGC TTGTGAAGTCAATCAAAAGTATTGCGTTTATGTGGAATCTAAGGATTTTTTAAAGGATTTCAAGCGTTTTAAAATCCAGG ATGTGGATTTTTTGTTTTCGCCTTTTAGCCTTATTTATGATTTTGTGCGTGATAATTTAGAAAATAAGCCGTTGTTGTAT TTGCTTTTGGAGCGTTCAAGATTTTATTTTTTGATTGCGGATAAAAAAGAGATTTTTTTAGCCAAATCCGTGTTTTTAGA AGAACAACCTGAAGAGTTTATAGAGAGCAAGGAAGAGGATTCTATGGAAATGGATAATGAGGCTGTGAATTTGTTTTTGA GTGAAATCCAAGAAGATATTGACAGCCTTGAAGAAGCGATAGGCCTAGACAGCAGTAAGGATAATAGCGAAAAAATAACA GAGGACGCTTATAGTTTGATTGAAGGCATGACAAATATCCCTTTGATTGCAAACGCCTTGCAAGAGGGATTGCGTGGCGT CTATCATTCTAGAGAGATTGACTTTGTAGAAAAAGTGGTTGTTTTAGACAGCTGTCAAATCCATCAAAAAGCGTTAATGC ATTTGCAAGAAACTTTGATGATAGAAGTGGATAGGCTTGATTTTTCTTTAGTGGAGCGCTTGAACATTTTAGCGCGCATG GAGAATGAAAAGCATGCGTTTTAG
Upstream 100 bases:
>100_bases TCGGTGATCATCCCTAAAGAATGGGAGCTTTCAAAGGCTAAAGAATATTTAAAGACGCGCATGGATTCTGTTGGGTTTGA AGAACCTCAAAGGGGTTTGG
Downstream 100 bases:
>100_bases CTACATTGAGCCAAGAGCGAAATACCTTATCAGCAAGCTTTCTAAAATTTGGGTTTTTTACATTTTTTTATCTTTTGTGG TGATAGGGGGGTTAGTGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVPIQALKIARTYSQKYPYTYFS AMSKAKEVLCEKQAFEQIKQENQDYQACEVNQKYCVYVESKDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLY LLLERSRFYFLIADKKEIFLAKSVFLEEQPEEFIESKEEDSMEMDNEAVNLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT EDAYSLIEGMTNIPLIANALQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLMIEVDRLDFSLVERLNILARM ENEKHAF
Sequences:
>Translated_327_residues MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVPIQALKIARTYSQKYPYTYFS AMSKAKEVLCEKQAFEQIKQENQDYQACEVNQKYCVYVESKDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLY LLLERSRFYFLIADKKEIFLAKSVFLEEQPEEFIESKEEDSMEMDNEAVNLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT EDAYSLIEGMTNIPLIANALQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLMIEVDRLDFSLVERLNILARM ENEKHAF >Mature_327_residues MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVPIQALKIARTYSQKYPYTYFS AMSKAKEVLCEKQAFEQIKQENQDYQACEVNQKYCVYVESKDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLY LLLERSRFYFLIADKKEIFLAKSVFLEEQPEEFIESKEEDSMEMDNEAVNLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT EDAYSLIEGMTNIPLIANALQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLMIEVDRLDFSLVERLNILARM ENEKHAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38532; Mature: 38532
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVP CCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHEEECHHHHHHHHHHHHHHHHCCCCCCCH IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDYQACEVNQKYCVYVES HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEECC KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCHHHHH AKSVFLEEQPEEFIESKEEDSMEMDNEAVNLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT HHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH EDAYSLIEGMTNIPLIANALQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLM HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEVDRLDFSLVERLNILARMENEKHAF HHHHHCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVP CCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHEEECHHHHHHHHHHHHHHHHCCCCCCCH IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDYQACEVNQKYCVYVES HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEECC KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCHHHHH AKSVFLEEQPEEFIESKEEDSMEMDNEAVNLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT HHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH EDAYSLIEGMTNIPLIANALQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLM HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEVDRLDFSLVERLNILARMENEKHAF HHHHHCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA