| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488311
Identifier: 103488311
GI number: 103488311
Start: 2988820
End: 2989485
Strand: Reverse
Name: 103488311
Synonym: Sala_2834
Alternate gene names: NA
Gene position: 2989485-2988820 (Counterclockwise)
Preceding gene: 103488312
Following gene: 103488310
Centisome position: 89.37
GC content: 67.72
Gene sequence:
>666_bases ATGAGTCGCATTCTGAACGTGGCCAGCGTGGCTGCCGTCGGCATGACTGCCGCCACCATGCTGCTTCTGGCGGAACCCGG TTTTGCAAGCGATCTTGCCGCCGACGCCAATCTCCCCGCCATTACCCTGCCCGGCGCCGCGGCGTCCGAGGCGCACACGG CGGATTTGCCGACCGAGGCCGAAGCGCCGGTCGATGAACAAAGCGACATTCAGCGCGAAGTCGCCCCCGAAACCCAAAGC CCGTCGCCGGTCACCGCCGACTCGCTCGCCGCGCTCGTCGCCGCGACGCCGAAGCCCGCGACGATCGACCGCGAGTTGCG CTGCCTTGCCGGTGCGGTCTATTTCGAATCGCGCGGCGAATCGCTTCCCGGCCAACTCGCGGTGGCGCATGTCGTGATCA ACCGCGCCCGATCGGGCCGCTTCCCGACCAGCCTGTGCGGCGTCGTTCACCAGAAGCACCAGTTCAGCTTTGTGCGCGGC GGCCGGATGCCCGCGATCCGCGAAGGCGCGCAGTGGGACAGGGCGGTCGCGATCGCGCAGATCGCGCTCGACGGCAGCTG GAAGAATCACGCGCCGGGGGCGCTTTTCTTTCACGCGCGCTACGTCTCGCCGGGCTGGCGCAAGACGCGCATCGCGCAGA TCGACAATCACATCTTCTATCGCTGA
Upstream 100 bases:
>100_bases ACACGCAGTCGGACGATGACCGCAGGCGGCGATACCGAACCATAGTCCCCCGCCTGTTTTCGAGAGTTTCGGTCCATCGG CCGCATGTTTGACGGACAAT
Downstream 100 bases:
>100_bases CGGGTGGGCGGGCGCGCCCGCCCGCCATCGCGTTCATTGCCAAGCCATGAATGCTGGCGCATGATGCGTGCATGATGCGT CATCTTTCCGTCGCCCTGCC
Product: cell wall hydrolase, SleB
Products: NA
Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; N-Acetylmuramoyl-L-Alanine Amidase; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEAEAPVDEQSDIQREVAPETQS PSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGESLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRG GRMPAIREGAQWDRAVAIAQIALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR
Sequences:
>Translated_221_residues MSRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEAEAPVDEQSDIQREVAPETQS PSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGESLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRG GRMPAIREGAQWDRAVAIAQIALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR >Mature_220_residues SRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEAEAPVDEQSDIQREVAPETQSP SPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGESLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRGG RMPAIREGAQWDRAVAIAQIALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23513; Mature: 23382
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC EAPVDEQSDIQREVAPETQSPSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGE CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC SLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRGGRMPAIREGAQWDRAVAIAQ CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHEEH IALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR EEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure SRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEA CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC EAPVDEQSDIQREVAPETQSPSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGE CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC SLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRGGRMPAIREGAQWDRAVAIAQ CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHEEH IALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR EEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA