Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488311

Identifier: 103488311

GI number: 103488311

Start: 2988820

End: 2989485

Strand: Reverse

Name: 103488311

Synonym: Sala_2834

Alternate gene names: NA

Gene position: 2989485-2988820 (Counterclockwise)

Preceding gene: 103488312

Following gene: 103488310

Centisome position: 89.37

GC content: 67.72

Gene sequence:

>666_bases
ATGAGTCGCATTCTGAACGTGGCCAGCGTGGCTGCCGTCGGCATGACTGCCGCCACCATGCTGCTTCTGGCGGAACCCGG
TTTTGCAAGCGATCTTGCCGCCGACGCCAATCTCCCCGCCATTACCCTGCCCGGCGCCGCGGCGTCCGAGGCGCACACGG
CGGATTTGCCGACCGAGGCCGAAGCGCCGGTCGATGAACAAAGCGACATTCAGCGCGAAGTCGCCCCCGAAACCCAAAGC
CCGTCGCCGGTCACCGCCGACTCGCTCGCCGCGCTCGTCGCCGCGACGCCGAAGCCCGCGACGATCGACCGCGAGTTGCG
CTGCCTTGCCGGTGCGGTCTATTTCGAATCGCGCGGCGAATCGCTTCCCGGCCAACTCGCGGTGGCGCATGTCGTGATCA
ACCGCGCCCGATCGGGCCGCTTCCCGACCAGCCTGTGCGGCGTCGTTCACCAGAAGCACCAGTTCAGCTTTGTGCGCGGC
GGCCGGATGCCCGCGATCCGCGAAGGCGCGCAGTGGGACAGGGCGGTCGCGATCGCGCAGATCGCGCTCGACGGCAGCTG
GAAGAATCACGCGCCGGGGGCGCTTTTCTTTCACGCGCGCTACGTCTCGCCGGGCTGGCGCAAGACGCGCATCGCGCAGA
TCGACAATCACATCTTCTATCGCTGA

Upstream 100 bases:

>100_bases
ACACGCAGTCGGACGATGACCGCAGGCGGCGATACCGAACCATAGTCCCCCGCCTGTTTTCGAGAGTTTCGGTCCATCGG
CCGCATGTTTGACGGACAAT

Downstream 100 bases:

>100_bases
CGGGTGGGCGGGCGCGCCCGCCCGCCATCGCGTTCATTGCCAAGCCATGAATGCTGGCGCATGATGCGTGCATGATGCGT
CATCTTTCCGTCGCCCTGCC

Product: cell wall hydrolase, SleB

Products: NA

Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; N-Acetylmuramoyl-L-Alanine Amidase; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEAEAPVDEQSDIQREVAPETQS
PSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGESLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRG
GRMPAIREGAQWDRAVAIAQIALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR

Sequences:

>Translated_221_residues
MSRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEAEAPVDEQSDIQREVAPETQS
PSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGESLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRG
GRMPAIREGAQWDRAVAIAQIALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR
>Mature_220_residues
SRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEAEAPVDEQSDIQREVAPETQSP
SPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGESLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRGG
RMPAIREGAQWDRAVAIAQIALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR

Specific function: Unknown

COG id: COG3773

COG function: function code M; Cell wall hydrolyses involved in spore germination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23513; Mature: 23382

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
EAPVDEQSDIQREVAPETQSPSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGE
CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
SLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRGGRMPAIREGAQWDRAVAIAQ
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHEEH
IALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR
EEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRILNVASVAAVGMTAATMLLLAEPGFASDLAADANLPAITLPGAAASEAHTADLPTEA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
EAPVDEQSDIQREVAPETQSPSPVTADSLAALVAATPKPATIDRELRCLAGAVYFESRGE
CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
SLPGQLAVAHVVINRARSGRFPTSLCGVVHQKHQFSFVRGGRMPAIREGAQWDRAVAIAQ
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHEEH
IALDGSWKNHAPGALFFHARYVSPGWRKTRIAQIDNHIFYR
EEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA