Click here to switch to the map view.

The map label for this gene is 103488270

Identifier: 103488270

GI number: 103488270

Start: 2958643

End: 2959128

Strand: Reverse

Name: 103488270

Synonym: Sala_2793

Alternate gene names: NA

Gene position: 2959128-2958643 (Counterclockwise)

Preceding gene: 103488273

Following gene: 103488268

Centisome position: 88.46

GC content: 68.11

Gene sequence:

>486_bases
ATGCCGAATGCGATTCCTGCCTTTTCCGCCCCCCGCGCGCGCCTCGTCCTCCTGGGCCTTGCCGCCCTGCTCGCAACCAG
CGGTTGCGCGCAGCTCAAGGGGCGGCAGGGCTATGTCGTCGATCCGGCGCTGACCGAGGCGATCACGCCGGGGGTCGACA
ATCGCGAATCGGTCGAACGCACGCTCGGTCGGCCCACTTTCGTCGGCCAGTTCGGGACCGGCGAATATTATTATGTGTCG
CGCGAAACGCGCCAGCTTGCCTTCGCCAAGCCGCGGCCGATCGCGCAGCAGGTGCTGCGTATCCGGTTCGATGCCGCGGG
CAATGTCGCCGCAGTCGACCGCACCGGGCTCGAACTGGTGAGCAAGATCAGCCCCGAAGGCGACAAGACGCCGACGCTCG
GCCGCGAGCGCAGCTTCTTCGAGGATATTTTCGGCAATATCGGCGCCGTCGGCGCGCCGGGTGCCGGGGCGCCGACGGGG
CCGTAA

Upstream 100 bases:

>100_bases
GGCACAAGCGGCTTGTGCGCGATCGCCGCTTGCGGTTAAGAGGCGCGAGAGCCAGCGCCACCGCCCGACGCAGCGGCGGA
CCGGCGCAACGGAGATTGAT

Downstream 100 bases:

>100_bases
ATCCTGGAAACGGATTAGAGCCGTCGCCCCCGCGAAGGCGGGGGCCGCTGGCGGCCTTGCGCTACCCCGATAACGGTCCC
CGCCTTCGCGGGGGCGACGC

Product: tmRNA-binding small protein A

Products: NA

Alternate protein names: SmpA/OmlA Domain Protein; SmpA/OmlA; Lipoprotein SmpA/OmlA Family; Small Protein A

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MPNAIPAFSAPRARLVLLGLAALLATSGCAQLKGRQGYVVDPALTEAITPGVDNRESVERTLGRPTFVGQFGTGEYYYVS
RETRQLAFAKPRPIAQQVLRIRFDAAGNVAAVDRTGLELVSKISPEGDKTPTLGRERSFFEDIFGNIGAVGAPGAGAPTG
P

Sequences:

>Translated_161_residues
MPNAIPAFSAPRARLVLLGLAALLATSGCAQLKGRQGYVVDPALTEAITPGVDNRESVERTLGRPTFVGQFGTGEYYYVS
RETRQLAFAKPRPIAQQVLRIRFDAAGNVAAVDRTGLELVSKISPEGDKTPTLGRERSFFEDIFGNIGAVGAPGAGAPTG
P
>Mature_160_residues
PNAIPAFSAPRARLVLLGLAALLATSGCAQLKGRQGYVVDPALTEAITPGVDNRESVERTLGRPTFVGQFGTGEYYYVSR
ETRQLAFAKPRPIAQQVLRIRFDAAGNVAAVDRTGLELVSKISPEGDKTPTLGRERSFFEDIFGNIGAVGAPGAGAPTGP

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16987; Mature: 16855

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNAIPAFSAPRARLVLLGLAALLATSGCAQLKGRQGYVVDPALTEAITPGVDNRESVER
CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECHHHHHHHCCCCCCHHHHHH
TLGRPTFVGQFGTGEYYYVSRETRQLAFAKPRPIAQQVLRIRFDAAGNVAAVDRTGLELV
HHCCCEEEEECCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHH
SKISPEGDKTPTLGRERSFFEDIFGNIGAVGAPGAGAPTGP
HHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PNAIPAFSAPRARLVLLGLAALLATSGCAQLKGRQGYVVDPALTEAITPGVDNRESVER
CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECHHHHHHHCCCCCCHHHHHH
TLGRPTFVGQFGTGEYYYVSRETRQLAFAKPRPIAQQVLRIRFDAAGNVAAVDRTGLELV
HHCCCEEEEECCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHH
SKISPEGDKTPTLGRERSFFEDIFGNIGAVGAPGAGAPTGP
HHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA