Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488252

Identifier: 103488252

GI number: 103488252

Start: 2931531

End: 2932316

Strand: Reverse

Name: 103488252

Synonym: Sala_2775

Alternate gene names: NA

Gene position: 2932316-2931531 (Counterclockwise)

Preceding gene: 103488254

Following gene: 103488250

Centisome position: 87.66

GC content: 65.39

Gene sequence:

>786_bases
ATGAAACTGCACATTTCCGCTTCCCTAAAGTACCGCCTGCCCGAACCTGCCCATCTGATGCTTCAGATCGAAGCCGCGGA
CGGTGGGGGCCAGAGGGTGATCGACGCCGCGCTGGACCTGGGCGAGCCGGCGCAGATGGCGCGGGTTCGAGACGCCGATA
GCGTTTGCACGCCGCTCTGGCTGCATGCCGAGGGTGCGCTCGATGTCGCCTATCACGCGATCGTCGCCGTCGAGCGCGGC
GACGCCGACCTTGCTGCACTCGCGCCGGTGCCGCTGCACCGTCTTCCTGCGGACGCGATCCTTTATCTCAACGAATCGCG
CTATTGCCCGTCGAACAAGTTTCACGCCTTCGTCGATCGCCGCTTTGGCGAACTCGATGGCGGCGCGAAAATCCAGCGGA
TGCGCGACTGGATCGAAAGTCGTTTCACCTATGTCACGGGGGCCAGCGACGCCGAGACGGGGGCGCTCGACAGCTTTGTC
GAACGCCGCGGCGTCTGCCGCGACTATGCCCATGTGATGATCGCGCTCGCCCGCGCGGCGCATGTCCCCGCGCGCATGGC
GAGCGTCTATGCGCTCGGCGTCCGCCCGCAGGATTTCCACGCGGTTGCCGAAGTCTATCTGGACGGCGACTGGCATATGG
TCGATGCGACGGGCATGACGCGGCCATCCGAATGCGCGCGCATCTGCGTCGGCCGCGACGCCGCCGACATCGCCTTCCTG
ACCGCCTATCGCGCGATCGATTTTGTCAACCAGTCCGTGCAGGTCGAGCGCATCGAGGAGACATAG

Upstream 100 bases:

>100_bases
TGGTGCGCGTAGCCGTCACTTGTGCTTTATCCTGGAGCGGCGCACGCCGCTTCTAGCTGCCATTAGCGCGACCGATCCCT
GCCTCATGCGTTGTCGATAG

Downstream 100 bases:

>100_bases
CCGCATGGCGACATCGCCCGGTCAGTCACGACGCGAAAAACTTGGAGCGGGTGAAGGGAATCGAACCCTCGTCGTAAGCT
TGGGAAGCTTCTGCTCTACC

Product: transglutaminase-like protein

Products: NA

Alternate protein names: Transglutaminase Domain Protein; Transglutaminase-Like; Transglutaminase Family Protein; Transglutaminase-Like Protein; Transglutaminase-Like Superfamily Protein; Transglutaminase-Like Domain-Containing Protein; Cysteine Protease Transglutaminase-Like Protein; Transglutaminase-Like S Cysteine Proteases; Transglutaminase; Protease Transglutaminase-Like; Cysteine Protease; Transglutaminase/Protease-Like Protein; Transglutaminase/Protease; Transglutaminase-Like S Cysteine Protease; Transglutaminase-Like Cysteine Protease; Cystein Protease

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLWLHAEGALDVAYHAIVAVERG
DADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDRRFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFV
ERRGVCRDYAHVMIALARAAHVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL
TAYRAIDFVNQSVQVERIEET

Sequences:

>Translated_261_residues
MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLWLHAEGALDVAYHAIVAVERG
DADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDRRFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFV
ERRGVCRDYAHVMIALARAAHVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL
TAYRAIDFVNQSVQVERIEET
>Mature_261_residues
MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLWLHAEGALDVAYHAIVAVERG
DADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDRRFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFV
ERRGVCRDYAHVMIALARAAHVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL
TAYRAIDFVNQSVQVERIEET

Specific function: Unknown

COG id: COG1305

COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28734; Mature: 28734

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLW
CEEEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCEEE
LHAEGALDVAYHAIVAVERGDADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDR
EECCCCHHHEEEEEEEEECCCCCEEEECCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHH
RFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFVERRGVCRDYAHVMIALARAA
HHCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
HVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL
CCHHHHHHEEEECCCCCHHHHEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHH
TAYRAIDFVNQSVQVERIEET
HHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure
MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLW
CEEEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCEEE
LHAEGALDVAYHAIVAVERGDADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDR
EECCCCHHHEEEEEEEEECCCCCEEEECCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHH
RFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFVERRGVCRDYAHVMIALARAA
HHCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
HVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL
CCHHHHHHEEEECCCCCHHHHEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHH
TAYRAIDFVNQSVQVERIEET
HHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA