| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488237
Identifier: 103488237
GI number: 103488237
Start: 2909295
End: 2909705
Strand: Reverse
Name: 103488237
Synonym: Sala_2760
Alternate gene names: NA
Gene position: 2909705-2909295 (Counterclockwise)
Preceding gene: 103488244
Following gene: 103488236
Centisome position: 86.98
GC content: 67.4
Gene sequence:
>411_bases ATGGCGACCCATTATCACGCCAATTATGTCCTGCCGCGCTGGGCGCCGAAGCTCACCAAGATCGACCAGATCGGCGCGCA TATCTTCTATCGCTGGCCGGGTTCGTGGGGCAAGCCGGGCGCCTTTTCGGATGCCTATGCCGGCGCCGAATGGATCCCCG CCTTCAGCCAGCTCTATCAGGGCGGCGCAGCGACCGCCGATGCCCCCGCTGACGCCGCCACCCTCGCCGCAGTCGCACTG CCGCGCGATCCGACCGATCGCCGCGCCGACAATGACGTCGGCGGCCGTGTCGATGTGACCAAAGGCTGGGTACCGAGCAT CCCCGATCCGACCAGCAGCACGTCGCGCTTCGACAGCCTGACGAGCCGACAAGGCGCGACGCCCGCGACCGATGGTGTGC CCGGACAATGA
Upstream 100 bases:
>100_bases AGCAGTTCGCGATGCACCTGCACCTTCAGCGACAGGAGCGCCGCATTGCGGTCGTGATCGACATCGGCGCGGATGGTGTC GGGTCGAGGCGAGCGTCGGC
Downstream 100 bases:
>100_bases TCAGGCGAATCGTCACATTCTGGCAGCGCCTGCGCGGAAGCGAACAGATCATGGTGGCGGCCGCCGTCGGCCTGGTGCTG TTTCTGTTGTGGGCGAGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: SleB-Like Protein; Spore Cortex-Lytic; Cell Wall Hydrolase Family
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MATHYHANYVLPRWAPKLTKIDQIGAHIFYRWPGSWGKPGAFSDAYAGAEWIPAFSQLYQGGAATADAPADAATLAAVAL PRDPTDRRADNDVGGRVDVTKGWVPSIPDPTSSTSRFDSLTSRQGATPATDGVPGQ
Sequences:
>Translated_136_residues MATHYHANYVLPRWAPKLTKIDQIGAHIFYRWPGSWGKPGAFSDAYAGAEWIPAFSQLYQGGAATADAPADAATLAAVAL PRDPTDRRADNDVGGRVDVTKGWVPSIPDPTSSTSRFDSLTSRQGATPATDGVPGQ >Mature_135_residues ATHYHANYVLPRWAPKLTKIDQIGAHIFYRWPGSWGKPGAFSDAYAGAEWIPAFSQLYQGGAATADAPADAATLAAVALP RDPTDRRADNDVGGRVDVTKGWVPSIPDPTSSTSRFDSLTSRQGATPATDGVPGQ
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14440; Mature: 14309
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATHYHANYVLPRWAPKLTKIDQIGAHIFYRWPGSWGKPGAFSDAYAGAEWIPAFSQLYQ CCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC GGAATADAPADAATLAAVALPRDPTDRRADNDVGGRVDVTKGWVPSIPDPTSSTSRFDSL CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHH TSRQGATPATDGVPGQ HHCCCCCCCCCCCCCC >Mature Secondary Structure ATHYHANYVLPRWAPKLTKIDQIGAHIFYRWPGSWGKPGAFSDAYAGAEWIPAFSQLYQ CCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC GGAATADAPADAATLAAVALPRDPTDRRADNDVGGRVDVTKGWVPSIPDPTSSTSRFDSL CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHH TSRQGATPATDGVPGQ HHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA