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The map label for this gene is yebA [H]

Identifier: 103488215

GI number: 103488215

Start: 2884970

End: 2886544

Strand: Reverse

Name: yebA [H]

Synonym: Sala_2738

Alternate gene names: 103488215

Gene position: 2886544-2884970 (Counterclockwise)

Preceding gene: 103488222

Following gene: 103488214

Centisome position: 86.29

GC content: 68.95

Gene sequence:

>1575_bases
TTGTTCCAGCGTCACGAACCCATCGCGGGGATGCCCGGCAATGCGGCCGCCCTGACGATGTCGCAGGCGATCCCGTTGCG
GCGGGTCGGCGGCGATTCGGCCGACCCGCCCGGTTGGCGCGACCGGCTGGCGCAGCTCGATCTCGTTCCCGATCTTGGCA
GCAACATCGGATCGGCCGAATGGTGGCGCGGGCTCGCGACATTGACGTTGCTGTGCGGAAGTGCGGTCGCCACCTTTCCG
GGCCTGCGCCCGCTGACGGTGGCGACGACGCCCGCGCTTGACCCCGCCGATTTCAACGAGGCGCGCGCCCAGATGATCGT
GCCGCTCGCGCTGGGCGGCGACACGGGGCGCCATATGGCGGCGACCGACGCAGTCCGCCCGCTGACCCAGACGCCGGAAC
GGCCGCAGATCGAGCTCACCGCGACGCTGGGGCGCGGCGACAGTTTTGCGCGCCTGCTCGAACGGTCGGGTGTCGGCAGC
GCCGAGGCGCAGGCAATCGCCGACAAGGTATCGGGCGCCGTGCCGCTCGCCGACATCGCGCCGGGAACGCGCATCGACCT
CATCCTCGGACGCCGCGCGTCGCGCACGATGCCGCGCCCCCTCGATGCGCTGGCGATGCGCGCGCGCTTCGATCTCAGGA
TCGAGATGGAACGCGTCGGCGGCCAGCTCGTCCTGCGTCGCATCCCGATCGCGGTCGATGCGACGCCGCTGCGCATTCGC
GGTCGGGTCGGCGACAGCCTCTATCGATCGGCGCGCGCCGCCGGGGCGCCGCCGCAGGCGATCCAGTCCTATCTGCGCGT
CATCGGCCAGCAGATTTCGGTTGGCAGCGACATTCAGGCAAGCGACGAATATGACATTATCGTGGAGCATCGCCGTGCCG
AAACGGGCGAAAGCGAAACGGGCAGGCTGCTCTATGCCGGATTGATCCGCGGCGGCAGGCCCAGGCTGTCGATGCTCGAA
TGGACGTCGGACGGACGCTCGCGATGGTTCGAGGCGTCGGGCGTCGGACAGCAGCGCGGGGGAATGGCGCGGCCCACCAA
CGGCCGCATCACCTCGACCTTCGGGATGCGCCGTCACCCGATCCTTGGCTACCGGCGGATGCACAGCGGCATCGATTTCG
CCGGCGGCTATGGCGCGCCCATCCATGCTGTGACCGACGGCGTCGTGGCGCTGGCGGGCCGCAACGGCGGTTATGGCAAT
TATGTCCGGCTCAATCACGGCAATGGCCTCGGCACCGGCTATGGCCATATGAGCCGTATTGCGGTGCGACCGGGCCAGCG
CGTCAGCCGCGGTCAGGTGATCGGCTATATCGGCTCGACCGGCCTGTCGACCGGCCCGCACCTTCATTATGAACTGTATC
GCAACGGCCGCGCGGTCAATCCATCGTCAGTGACCTTCGTGACCCGCGCCCTGCTCGAAGGAAAGGAACTCGCCGCTTTC
CGCGCGCGTATCCGCGAATTGACCGCGATCGCACCGGGTGCGGCGCTTGCCCCGATGGCGCTCCGGCAGATCGAAGGGCC
AAAGCTCGGCAGTCTGGCCGATGTGGCGTCGAAGCGGGCGGGCGAGGGCATCTGA

Upstream 100 bases:

>100_bases
GACCCATTAAATTGACTTTAACGACCTTTCTTTACACACGAACCTTCGATACTATCTTTCGGCAGCCGGTGCGAAGGGGG
CTGCCGGGCGGGGGTTGCTT

Downstream 100 bases:

>100_bases
AGGGACATGCCCTCCGCTGAAGGGGAAGGGCTTTAGAAGAACCATTTGCCCCGCGCGGCTGGGCCGCTATGCAGCGCGCA
TGACCCACGCCGCTTTCCCC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MFQRHEPIAGMPGNAAALTMSQAIPLRRVGGDSADPPGWRDRLAQLDLVPDLGSNIGSAEWWRGLATLTLLCGSAVATFP
GLRPLTVATTPALDPADFNEARAQMIVPLALGGDTGRHMAATDAVRPLTQTPERPQIELTATLGRGDSFARLLERSGVGS
AEAQAIADKVSGAVPLADIAPGTRIDLILGRRASRTMPRPLDALAMRARFDLRIEMERVGGQLVLRRIPIAVDATPLRIR
GRVGDSLYRSARAAGAPPQAIQSYLRVIGQQISVGSDIQASDEYDIIVEHRRAETGESETGRLLYAGLIRGGRPRLSMLE
WTSDGRSRWFEASGVGQQRGGMARPTNGRITSTFGMRRHPILGYRRMHSGIDFAGGYGAPIHAVTDGVVALAGRNGGYGN
YVRLNHGNGLGTGYGHMSRIAVRPGQRVSRGQVIGYIGSTGLSTGPHLHYELYRNGRAVNPSSVTFVTRALLEGKELAAF
RARIRELTAIAPGAALAPMALRQIEGPKLGSLADVASKRAGEGI

Sequences:

>Translated_524_residues
MFQRHEPIAGMPGNAAALTMSQAIPLRRVGGDSADPPGWRDRLAQLDLVPDLGSNIGSAEWWRGLATLTLLCGSAVATFP
GLRPLTVATTPALDPADFNEARAQMIVPLALGGDTGRHMAATDAVRPLTQTPERPQIELTATLGRGDSFARLLERSGVGS
AEAQAIADKVSGAVPLADIAPGTRIDLILGRRASRTMPRPLDALAMRARFDLRIEMERVGGQLVLRRIPIAVDATPLRIR
GRVGDSLYRSARAAGAPPQAIQSYLRVIGQQISVGSDIQASDEYDIIVEHRRAETGESETGRLLYAGLIRGGRPRLSMLE
WTSDGRSRWFEASGVGQQRGGMARPTNGRITSTFGMRRHPILGYRRMHSGIDFAGGYGAPIHAVTDGVVALAGRNGGYGN
YVRLNHGNGLGTGYGHMSRIAVRPGQRVSRGQVIGYIGSTGLSTGPHLHYELYRNGRAVNPSSVTFVTRALLEGKELAAF
RARIRELTAIAPGAALAPMALRQIEGPKLGSLADVASKRAGEGI
>Mature_524_residues
MFQRHEPIAGMPGNAAALTMSQAIPLRRVGGDSADPPGWRDRLAQLDLVPDLGSNIGSAEWWRGLATLTLLCGSAVATFP
GLRPLTVATTPALDPADFNEARAQMIVPLALGGDTGRHMAATDAVRPLTQTPERPQIELTATLGRGDSFARLLERSGVGS
AEAQAIADKVSGAVPLADIAPGTRIDLILGRRASRTMPRPLDALAMRARFDLRIEMERVGGQLVLRRIPIAVDATPLRIR
GRVGDSLYRSARAAGAPPQAIQSYLRVIGQQISVGSDIQASDEYDIIVEHRRAETGESETGRLLYAGLIRGGRPRLSMLE
WTSDGRSRWFEASGVGQQRGGMARPTNGRITSTFGMRRHPILGYRRMHSGIDFAGGYGAPIHAVTDGVVALAGRNGGYGN
YVRLNHGNGLGTGYGHMSRIAVRPGQRVSRGQVIGYIGSTGLSTGPHLHYELYRNGRAVNPSSVTFVTRALLEGKELAAF
RARIRELTAIAPGAALAPMALRQIEGPKLGSLADVASKRAGEGI

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=252, Percent_Identity=34.5238095238095, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=38.135593220339, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87082297, Length=129, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 55862; Mature: 55862

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQRHEPIAGMPGNAAALTMSQAIPLRRVGGDSADPPGWRDRLAQLDLVPDLGSNIGSAE
CCCCCCCCCCCCCCHHEEEHHHCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHH
WWRGLATLTLLCGSAVATFPGLRPLTVATTPALDPADFNEARAQMIVPLALGGDTGRHMA
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCEE
ATDAVRPLTQTPERPQIELTATLGRGDSFARLLERSGVGSAEAQAIADKVSGAVPLADIA
HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCC
PGTRIDLILGRRASRTMPRPLDALAMRARFDLRIEMERVGGQLVLRRIPIAVDATPLRIR
CCCEEEEEECCCCCCCCCCCHHHHHHHHHCCEEEEHHHCCCCEEEECCCEEECCCCEEEE
GRVGDSLYRSARAAGAPPQAIQSYLRVIGQQISVGSDIQASDEYDIIVEHRRAETGESET
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCC
GRLLYAGLIRGGRPRLSMLEWTSDGRSRWFEASGVGQQRGGMARPTNGRITSTFGMRRHP
CCEEEEEHHCCCCCCCEEEEECCCCHHHEEECCCCCHHCCCCCCCCCCEEEEECCCCCCC
ILGYRRMHSGIDFAGGYGAPIHAVTDGVVALAGRNGGYGNYVRLNHGNGLGTGYGHMSRI
CHHHHHHHCCCCCCCCCCCCHHHHCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEE
AVRPGQRVSRGQVIGYIGSTGLSTGPHLHYELYRNGRAVNPSSVTFVTRALLEGKELAAF
EECCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHH
RARIRELTAIAPGAALAPMALRQIEGPKLGSLADVASKRAGEGI
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MFQRHEPIAGMPGNAAALTMSQAIPLRRVGGDSADPPGWRDRLAQLDLVPDLGSNIGSAE
CCCCCCCCCCCCCCHHEEEHHHCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHH
WWRGLATLTLLCGSAVATFPGLRPLTVATTPALDPADFNEARAQMIVPLALGGDTGRHMA
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCEE
ATDAVRPLTQTPERPQIELTATLGRGDSFARLLERSGVGSAEAQAIADKVSGAVPLADIA
HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCC
PGTRIDLILGRRASRTMPRPLDALAMRARFDLRIEMERVGGQLVLRRIPIAVDATPLRIR
CCCEEEEEECCCCCCCCCCCHHHHHHHHHCCEEEEHHHCCCCEEEECCCEEECCCCEEEE
GRVGDSLYRSARAAGAPPQAIQSYLRVIGQQISVGSDIQASDEYDIIVEHRRAETGESET
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCC
GRLLYAGLIRGGRPRLSMLEWTSDGRSRWFEASGVGQQRGGMARPTNGRITSTFGMRRHP
CCEEEEEHHCCCCCCCEEEEECCCCHHHEEECCCCCHHCCCCCCCCCCEEEEECCCCCCC
ILGYRRMHSGIDFAGGYGAPIHAVTDGVVALAGRNGGYGNYVRLNHGNGLGTGYGHMSRI
CHHHHHHHCCCCCCCCCCCCHHHHCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEE
AVRPGQRVSRGQVIGYIGSTGLSTGPHLHYELYRNGRAVNPSSVTFVTRALLEGKELAAF
EECCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHH
RARIRELTAIAPGAALAPMALRQIEGPKLGSLADVASKRAGEGI
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]