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The map label for this gene is rimM

Identifier: 103488203

GI number: 103488203

Start: 2872140

End: 2872631

Strand: Reverse

Name: rimM

Synonym: Sala_2726

Alternate gene names: 103488203

Gene position: 2872631-2872140 (Counterclockwise)

Preceding gene: 103488204

Following gene: 103488202

Centisome position: 85.87

GC content: 66.26

Gene sequence:

>492_bases
GTGACCGCCGACCGTCCCGTCACCCTCGCCGCCATTGCGGGCGCGCACGGGGTGCGGGGCGAGGTGCGGCTCAAATTGTT
CGGCGAAGGCGCGGAGACTCTCCGCGCCTTTTCCGTTTTTGACGCGGGCGATCGCAAGCTGACCCTGAAATCGGTACGCC
CGGCCAATCAGGGCGCGGTCGCCGCGTTTGTGGAAATTGCCGACCGCAGCGCGGCCGAAGCGCTCCGCGGCACATTGCTC
ACCGTCCCGCGCTCGGCGCTTCCGCCACTGGGGCCAGGCGAATATTATCACCACGACCTGATCGGCCTGCCCTGCGTTTC
GACCGAGGGCGCTCCGGTGGGCCATGTCGCCGCGGTCGACAATTTCGGTGCGGGCGACATCCTTGAAATCGAAAAGCCGG
ACGGCAAGCGATTCATGGTGCCGATGACGGTCACGGCGGTGCCGACATGGGACGCCGAAACGGTGACCGTGAACGCGGCA
TTCATCGAATAG

Upstream 100 bases:

>100_bases
CGATGCGACCGCCGAAGATGCGGCGGCGATCGCCGAGGAAGTCGCCGAAGGCGGCCCGGTTGCGCCCGAAGCCGAAGAAA
AGGCCGAAGGCTAAGCTCCC

Downstream 100 bases:

>100_bases
GAGCCCGGCCGCATCGTGGCATCGGGGCGTCGCCGACCGGCATTCGCGCGGCCGACGCGGCCCTGGCGGCGCGGTTTCCT
TCGTTTCGCCGCACAATGCA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTADRPVTLAAIAGAHGVRGEVRLKLFGEGAETLRAFSVFDAGDRKLTLKSVRPANQGAVAAFVEIADRSAAEALRGTLL
TVPRSALPPLGPGEYYHHDLIGLPCVSTEGAPVGHVAAVDNFGAGDILEIEKPDGKRFMVPMTVTAVPTWDAETVTVNAA
FIE

Sequences:

>Translated_163_residues
MTADRPVTLAAIAGAHGVRGEVRLKLFGEGAETLRAFSVFDAGDRKLTLKSVRPANQGAVAAFVEIADRSAAEALRGTLL
TVPRSALPPLGPGEYYHHDLIGLPCVSTEGAPVGHVAAVDNFGAGDILEIEKPDGKRFMVPMTVTAVPTWDAETVTVNAA
FIE
>Mature_162_residues
TADRPVTLAAIAGAHGVRGEVRLKLFGEGAETLRAFSVFDAGDRKLTLKSVRPANQGAVAAFVEIADRSAAEALRGTLLT
VPRSALPPLGPGEYYHHDLIGLPCVSTEGAPVGHVAAVDNFGAGDILEIEKPDGKRFMVPMTVTAVPTWDAETVTVNAAF
IE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=130, Percent_Identity=31.5384615384615, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SPHAL (Q1GPJ1)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_617764.1
- ProteinModelPortal:   Q1GPJ1
- SMR:   Q1GPJ1
- GeneID:   4082465
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_2726
- NMPDR:   fig|317655.9.peg.2592
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   CLSK835335
- BioCyc:   SALA317655:SALA_2726-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 17091; Mature: 16959

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADRPVTLAAIAGAHGVRGEVRLKLFGEGAETLRAFSVFDAGDRKLTLKSVRPANQGAV
CCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHEEEEEEECCCCCEEEEEECCCCCCCCE
AAFVEIADRSAAEALRGTLLTVPRSALPPLGPGEYYHHDLIGLPCVSTEGAPVGHVAAVD
EEEEEHHCCHHHHHHHCEEEECCHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEC
NFGAGDILEIEKPDGKRFMVPMTVTAVPTWDAETVTVNAAFIE
CCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEEC
>Mature Secondary Structure 
TADRPVTLAAIAGAHGVRGEVRLKLFGEGAETLRAFSVFDAGDRKLTLKSVRPANQGAV
CCCCCEEEEEECCCCCCCCEEEEEEECCCHHHEEEEEEECCCCCEEEEEECCCCCCCCE
AAFVEIADRSAAEALRGTLLTVPRSALPPLGPGEYYHHDLIGLPCVSTEGAPVGHVAAVD
EEEEEHHCCHHHHHHHCEEEECCHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEC
NFGAGDILEIEKPDGKRFMVPMTVTAVPTWDAETVTVNAAFIE
CCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA