| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is merA [H]
Identifier: 103488160
GI number: 103488160
Start: 2827775
End: 2829202
Strand: Reverse
Name: merA [H]
Synonym: Sala_2683
Alternate gene names: 103488160
Gene position: 2829202-2827775 (Counterclockwise)
Preceding gene: 103488161
Following gene: 103488153
Centisome position: 84.58
GC content: 63.66
Gene sequence:
>1428_bases ATGACGGACTACCATGCGCCCAAAGGAAGAGAGACCGTCTATGACCTTGCCGTCATCGGCGCGGGTTCGGCCGGGTTCTC CGCTGCGATCACGGCCGCCGATCAGGGCGCCAATGTCGCGCTGATCGGCCACGGGACCATCGGCGGAACCTGCGTCAATG TCGGCTGCGTCCCGTCGAAGACGATGATCCGCGCCGCCGAGGCGCTGCACGGCGCGCGCGCAGCGGCGCGCTTTCCCGGC GTTTCCGGCAATGCGCAGGTGGATGACTGGCACAGTCTGATTGCCGCCAAGGACGACCTCGTCTCGGACCTGCGGCAGAG GAAATATGTCGACCTGCTGCCCGAGTATGACGGCATCACCTATCTGGAGGGCGCTGCACGGCTCGATGGCGCGGGCGTGA TCGTTGGCGACGAGCCGATTACCGCCGGAAAGATCATCATCGCCACTGGTGGCCGTCCATCCGTACCGCCGATACCGGGC ATCGAGACAGTGAACTACCTGACGAGCACATCGCTGCTGGACCTACAGGAACTGCCCCGAAGCCTGATCGTCGTCGGCGG CGGCTATGTCGGCGCGGAACTTGCGCAGATGATGGCGCGTATGGGTGTCGATGTCACTATGGTGTGCCGCTCGCGCCTCC TGCCTCAGGTGGAGCCGCAGGTGTCGGAAGCTCTGGCCGGGATATTCCGGTCCGAGGGCATGACCCTCTACTGCGGCATC GCCTATGATGCCTGCCGGGAGGACGAGCGAGGGGTCATGCTCTGCGTCCAGGAAGGCGGCAGGCCGATCGAACTCAAGGC CGAACGGCTGCTGGTCGCCACGGGGCGCACGCCAAACACCGAGGGGCTGGGGCTCGAGGAAGCGGGCATCGCCCGGGACG CGCGAGGCGCCATCGTCGTCGATAATCACATGCGCACCTCAAAAGCCGACATCTATGCCGCTGGCGACGTCACCAACCGT GACCAGTTCGTCTATATGGCGGCCTATGGCGCCAAGCTGGCCGCGCTCAACGCACTGAACGGCGATAGTCTGACCTATGA TAATGCGACGATGCCGTGGGTCGTGTTCACCGACCCGCAGCTTGCCGGCGTTGGCCTCTCCGAAGCTGCCGCGAAATCAG CGGGCTTTGAGACAAAAACATCGATTTTGCCGCTCGATCTGGTGCCGCGGGCGCTTGCAGCGCGCGATACGCGCGGGCTT GTCAAGCTGGTCGCCGATGCCGGGAGCGATCTTCTTCTTGGTGGACAGATCATTGCGCCCGAAGGTGCCGACAGCATCCA GACATTGGCCCTCGCTCTCAGACACGGCATGACGGTCGCCGAACTTGGTGAAACAATCTTCCCCTATCTAACGACGGTCG AGGCGCTGAAGCTGGCGGCGCAAGGCTTTGGCAAGGACGTCACAAAGCTATACTGTTGTGCCGGATGA
Upstream 100 bases:
>100_bases CGCTGCCGCTTCCACAAACGCGGGCTATCCGGCATCGGTCAAGAACAGAAGCCCGTGAGGAGCGCGATGGAGATCCAGAC GAACGGGAAAAGAAGCTGCC
Downstream 100 bases:
>100_bases CAAGGCACCACCTGAATTGGTTCTGCAATCCAGCCATGCGCCTTTCCAGCGCCTGCACGCTCACCGCGTCTGCATTGCGC CTCTTGTCGGAGACGCATCG
Product: mercuric reductase MerA
Products: NA
Alternate protein names: Hg(II) reductase [H]
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MTDYHAPKGRETVYDLAVIGAGSAGFSAAITAADQGANVALIGHGTIGGTCVNVGCVPSKTMIRAAEALHGARAAARFPG VSGNAQVDDWHSLIAAKDDLVSDLRQRKYVDLLPEYDGITYLEGAARLDGAGVIVGDEPITAGKIIIATGGRPSVPPIPG IETVNYLTSTSLLDLQELPRSLIVVGGGYVGAELAQMMARMGVDVTMVCRSRLLPQVEPQVSEALAGIFRSEGMTLYCGI AYDACREDERGVMLCVQEGGRPIELKAERLLVATGRTPNTEGLGLEEAGIARDARGAIVVDNHMRTSKADIYAAGDVTNR DQFVYMAAYGAKLAALNALNGDSLTYDNATMPWVVFTDPQLAGVGLSEAAAKSAGFETKTSILPLDLVPRALAARDTRGL VKLVADAGSDLLLGGQIIAPEGADSIQTLALALRHGMTVAELGETIFPYLTTVEALKLAAQGFGKDVTKLYCCAG
Sequences:
>Translated_475_residues MTDYHAPKGRETVYDLAVIGAGSAGFSAAITAADQGANVALIGHGTIGGTCVNVGCVPSKTMIRAAEALHGARAAARFPG VSGNAQVDDWHSLIAAKDDLVSDLRQRKYVDLLPEYDGITYLEGAARLDGAGVIVGDEPITAGKIIIATGGRPSVPPIPG IETVNYLTSTSLLDLQELPRSLIVVGGGYVGAELAQMMARMGVDVTMVCRSRLLPQVEPQVSEALAGIFRSEGMTLYCGI AYDACREDERGVMLCVQEGGRPIELKAERLLVATGRTPNTEGLGLEEAGIARDARGAIVVDNHMRTSKADIYAAGDVTNR DQFVYMAAYGAKLAALNALNGDSLTYDNATMPWVVFTDPQLAGVGLSEAAAKSAGFETKTSILPLDLVPRALAARDTRGL VKLVADAGSDLLLGGQIIAPEGADSIQTLALALRHGMTVAELGETIFPYLTTVEALKLAAQGFGKDVTKLYCCAG >Mature_474_residues TDYHAPKGRETVYDLAVIGAGSAGFSAAITAADQGANVALIGHGTIGGTCVNVGCVPSKTMIRAAEALHGARAAARFPGV SGNAQVDDWHSLIAAKDDLVSDLRQRKYVDLLPEYDGITYLEGAARLDGAGVIVGDEPITAGKIIIATGGRPSVPPIPGI ETVNYLTSTSLLDLQELPRSLIVVGGGYVGAELAQMMARMGVDVTMVCRSRLLPQVEPQVSEALAGIFRSEGMTLYCGIA YDACREDERGVMLCVQEGGRPIELKAERLLVATGRTPNTEGLGLEEAGIARDARGAIVVDNHMRTSKADIYAAGDVTNRD QFVYMAAYGAKLAALNALNGDSLTYDNATMPWVVFTDPQLAGVGLSEAAAKSAGFETKTSILPLDLVPRALAARDTRGLV KLVADAGSDLLLGGQIIAPEGADSIQTLALALRHGMTVAELGETIFPYLTTVEALKLAAQGFGKDVTKLYCCAG
Specific function: Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0) [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI91199540, Length=476, Percent_Identity=29.8319327731092, Blast_Score=187, Evalue=2e-47, Organism=Homo sapiens, GI50301238, Length=465, Percent_Identity=31.3978494623656, Blast_Score=155, Evalue=7e-38, Organism=Homo sapiens, GI22035672, Length=474, Percent_Identity=30.168776371308, Blast_Score=125, Evalue=7e-29, Organism=Homo sapiens, GI291045266, Length=455, Percent_Identity=28.1318681318681, Blast_Score=122, Evalue=6e-28, Organism=Homo sapiens, GI33519430, Length=419, Percent_Identity=27.4463007159904, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI33519428, Length=419, Percent_Identity=27.4463007159904, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI33519426, Length=419, Percent_Identity=27.4463007159904, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI148277065, Length=419, Percent_Identity=27.4463007159904, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI148277071, Length=419, Percent_Identity=27.4463007159904, Blast_Score=115, Evalue=6e-26, Organism=Homo sapiens, GI291045268, Length=450, Percent_Identity=26.8888888888889, Blast_Score=105, Evalue=1e-22, Organism=Escherichia coli, GI87081717, Length=456, Percent_Identity=32.4561403508772, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI1786307, Length=476, Percent_Identity=30.0420168067227, Blast_Score=194, Evalue=1e-50, Organism=Escherichia coli, GI1789915, Length=431, Percent_Identity=30.8584686774942, Blast_Score=166, Evalue=4e-42, Organism=Escherichia coli, GI87082354, Length=466, Percent_Identity=26.1802575107296, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI1789065, Length=188, Percent_Identity=32.4468085106383, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI32565766, Length=461, Percent_Identity=30.1518438177874, Blast_Score=184, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17557007, Length=488, Percent_Identity=29.7131147540984, Blast_Score=151, Evalue=8e-37, Organism=Caenorhabditis elegans, GI71983419, Length=434, Percent_Identity=27.8801843317972, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI71983429, Length=434, Percent_Identity=27.8801843317972, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI71982272, Length=488, Percent_Identity=26.4344262295082, Blast_Score=112, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17559934, Length=187, Percent_Identity=28.8770053475936, Blast_Score=65, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6321091, Length=475, Percent_Identity=32.2105263157895, Blast_Score=199, Evalue=6e-52, Organism=Saccharomyces cerevisiae, GI6325166, Length=464, Percent_Identity=26.5086206896552, Blast_Score=131, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6325240, Length=481, Percent_Identity=23.7006237006237, Blast_Score=91, Evalue=4e-19, Organism=Drosophila melanogaster, GI21358499, Length=475, Percent_Identity=31.7894736842105, Blast_Score=203, Evalue=2e-52, Organism=Drosophila melanogaster, GI24640551, Length=499, Percent_Identity=30.2605210420842, Blast_Score=156, Evalue=4e-38, Organism=Drosophila melanogaster, GI24640549, Length=493, Percent_Identity=30.2231237322515, Blast_Score=155, Evalue=5e-38, Organism=Drosophila melanogaster, GI24640553, Length=493, Percent_Identity=30.2231237322515, Blast_Score=155, Evalue=6e-38, Organism=Drosophila melanogaster, GI17737741, Length=496, Percent_Identity=30.0403225806452, Blast_Score=147, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000815 - InterPro: IPR021179 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00403 HMA; PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.16.1.1 [H]
Molecular weight: Translated: 49609; Mature: 49478
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS00076 PYRIDINE_REDOX_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDYHAPKGRETVYDLAVIGAGSAGFSAAITAADQGANVALIGHGTIGGTCVNVGCVPSK CCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEECCCCCH TMIRAAEALHGARAAARFPGVSGNAQVDDWHSLIAAKDDLVSDLRQRKYVDLLPEYDGIT HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE YLEGAARLDGAGVIVGDEPITAGKIIIATGGRPSVPPIPGIETVNYLTSTSLLDLQELPR EECCCCEECCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHCCC SLIVVGGGYVGAELAQMMARMGVDVTMVCRSRLLPQVEPQVSEALAGIFRSEGMTLYCGI EEEEEECCHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEE AYDACREDERGVMLCVQEGGRPIELKAERLLVATGRTPNTEGLGLEEAGIARDARGAIVV EHHHCCCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE DNHMRTSKADIYAAGDVTNRDQFVYMAAYGAKLAALNALNGDSLTYDNATMPWVVFTDPQ ECCCCCCCCCEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCEEECCCCCCEEEEECCC LAGVGLSEAAAKSAGFETKTSILPLDLVPRALAARDTRGLVKLVADAGSDLLLGGQIIAP CCCCCCHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCEEECC EGADSIQTLALALRHGMTVAELGETIFPYLTTVEALKLAAQGFGKDVTKLYCCAG CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC >Mature Secondary Structure TDYHAPKGRETVYDLAVIGAGSAGFSAAITAADQGANVALIGHGTIGGTCVNVGCVPSK CCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEECCCCCH TMIRAAEALHGARAAARFPGVSGNAQVDDWHSLIAAKDDLVSDLRQRKYVDLLPEYDGIT HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE YLEGAARLDGAGVIVGDEPITAGKIIIATGGRPSVPPIPGIETVNYLTSTSLLDLQELPR EECCCCEECCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHCCC SLIVVGGGYVGAELAQMMARMGVDVTMVCRSRLLPQVEPQVSEALAGIFRSEGMTLYCGI EEEEEECCHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEE AYDACREDERGVMLCVQEGGRPIELKAERLLVATGRTPNTEGLGLEEAGIARDARGAIVV EHHHCCCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE DNHMRTSKADIYAAGDVTNRDQFVYMAAYGAKLAALNALNGDSLTYDNATMPWVVFTDPQ ECCCCCCCCCEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCEEECCCCCCEEEEECCC LAGVGLSEAAAKSAGFETKTSILPLDLVPRALAARDTRGLVKLVADAGSDLLLGGQIIAP CCCCCCHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCEEECC EGADSIQTLALALRHGMTVAELGETIFPYLTTVEALKLAAQGFGKDVTKLYCCAG CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3037534 [H]