| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488141
Identifier: 103488141
GI number: 103488141
Start: 2808396
End: 2809298
Strand: Reverse
Name: 103488141
Synonym: Sala_2664
Alternate gene names: NA
Gene position: 2809298-2808396 (Counterclockwise)
Preceding gene: 103488144
Following gene: 103488140
Centisome position: 83.98
GC content: 61.79
Gene sequence:
>903_bases ATGACCCGCACCAACGGATCGGCCGCGCGTGCCGACGTCTATTCGCGCATCACCGCCGAGATAATTTCCGCCATCGAAGC CGGCGCCGGAAACTGGCGTATGCCCTGGCATCACGATGGCACAGCCATTACCAGGCCGCAGAACGTGATCTCTCGCAGGA AGTACCGAGGCGTCAACGTGCTGGCGCTGTGGATCGCCGCGGAAGCCAGCGCATATTCCAGTGGCCTGTGGGGCACCTAC CGCCAATGGGCTTCGCTCGGAGCCCAGGTGCGCAAGGGAGAGCGTGGCACCACGGTCGTGTTCTGGAAGCAGGCTGCGTC GCGTGCCGACGACGACCATGACGATGGCGAAGCAGGGTCAGGACGTATGTTCGCTCGCGCCTTCACCGTGTTCAACCTCG CCCAAGTGGATGGATATGAGCCGGCTCTAGTCGTAGTTCTGCCCGAGAACGAACGATTTACGCACGCCGATGCCTTCTTC GACGCCTTGCGCATTCCCATCACATACGGTGCATATGACGCGCATTACCGCATCGATCTCGATCAGATTTTCATGCCACC CTTCTCGGCGTTCGAGGATGCTGCCCATTTCACGGGCACGCTATTACATGAAGCTGCCCATGCGGTTGGGGCGGAACACC GGCTCGATCGCAACTTCAAGGAGCGCTTCAAGCGCGACAGTCTCGCAATCGAGGAGATTTGCGCCGAACTGACCGCTTCG TTTGTCCTCGCAGACCTCGGCATTGCCCATCACCCGCGTCCCGATCACGCCGCTTACGTTGCCTCGTGGTTGCGAGCGCT AAAAGATGACGCACGCGCCATCTTCACCGCGGCCAGCAAGGCCCAGGCGGCCGCCGACTGGATGCATGCCCAGCAGCCCC AGGCGGAGGAGTTGGCGGCATGA
Upstream 100 bases:
>100_bases GCCCCGTAACGCCCCGCCAGAGGAAAAGTGCGGCCGGTTGGCCGTGACGGGTTCAGCACGGCGAGAGAGGCTCGCCGTCG GCCCGTCATGGAGACCTGCC
Downstream 100 bases:
>100_bases TCCTCCTCACACAAGAATTGCGCGACCAACTGCGCGCCAACCACCGCGCCCGCTGTGAGGCGCTCCGCCGCAGTGAACCC GCACCCGACCCGGTGCCGGT
Product: replication primases
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MTRTNGSAARADVYSRITAEIISAIEAGAGNWRMPWHHDGTAITRPQNVISRRKYRGVNVLALWIAAEASAYSSGLWGTY RQWASLGAQVRKGERGTTVVFWKQAASRADDDHDDGEAGSGRMFARAFTVFNLAQVDGYEPALVVVLPENERFTHADAFF DALRIPITYGAYDAHYRIDLDQIFMPPFSAFEDAAHFTGTLLHEAAHAVGAEHRLDRNFKERFKRDSLAIEEICAELTAS FVLADLGIAHHPRPDHAAYVASWLRALKDDARAIFTAASKAQAAADWMHAQQPQAEELAA
Sequences:
>Translated_300_residues MTRTNGSAARADVYSRITAEIISAIEAGAGNWRMPWHHDGTAITRPQNVISRRKYRGVNVLALWIAAEASAYSSGLWGTY RQWASLGAQVRKGERGTTVVFWKQAASRADDDHDDGEAGSGRMFARAFTVFNLAQVDGYEPALVVVLPENERFTHADAFF DALRIPITYGAYDAHYRIDLDQIFMPPFSAFEDAAHFTGTLLHEAAHAVGAEHRLDRNFKERFKRDSLAIEEICAELTAS FVLADLGIAHHPRPDHAAYVASWLRALKDDARAIFTAASKAQAAADWMHAQQPQAEELAA >Mature_299_residues TRTNGSAARADVYSRITAEIISAIEAGAGNWRMPWHHDGTAITRPQNVISRRKYRGVNVLALWIAAEASAYSSGLWGTYR QWASLGAQVRKGERGTTVVFWKQAASRADDDHDDGEAGSGRMFARAFTVFNLAQVDGYEPALVVVLPENERFTHADAFFD ALRIPITYGAYDAHYRIDLDQIFMPPFSAFEDAAHFTGTLLHEAAHAVGAEHRLDRNFKERFKRDSLAIEEICAELTASF VLADLGIAHHPRPDHAAYVASWLRALKDDARAIFTAASKAQAAADWMHAQQPQAEELAA
Specific function: Unknown
COG id: COG4227
COG function: function code L; Antirestriction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017113 - InterPro: IPR013610 [H]
Pfam domain/function: PF08401 DUF1738 [H]
EC number: NA
Molecular weight: Translated: 33199; Mature: 33068
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTNGSAARADVYSRITAEIISAIEAGAGNWRMPWHHDGTAITRPQNVISRRKYRGVNV CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCEE LALWIAAEASAYSSGLWGTYRQWASLGAQVRKGERGTTVVFWKQAASRADDDHDDGEAGS EEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHCCCCCCCCCCCCCC GRMFARAFTVFNLAQVDGYEPALVVVLPENERFTHADAFFDALRIPITYGAYDAHYRIDL CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCEEECCCCCEEEEEH DQIFMPPFSAFEDAAHFTGTLLHEAAHAVGAEHRLDRNFKERFKRDSLAIEEICAELTAS HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH FVLADLGIAHHPRPDHAAYVASWLRALKDDARAIFTAASKAQAAADWMHAQQPQAEELAA HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC >Mature Secondary Structure TRTNGSAARADVYSRITAEIISAIEAGAGNWRMPWHHDGTAITRPQNVISRRKYRGVNV CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCEE LALWIAAEASAYSSGLWGTYRQWASLGAQVRKGERGTTVVFWKQAASRADDDHDDGEAGS EEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHCCCCCCCCCCCCCC GRMFARAFTVFNLAQVDGYEPALVVVLPENERFTHADAFFDALRIPITYGAYDAHYRIDL CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCEEECCCCCEEEEEH DQIFMPPFSAFEDAAHFTGTLLHEAAHAVGAEHRLDRNFKERFKRDSLAIEEICAELTAS HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH FVLADLGIAHHPRPDHAAYVASWLRALKDDARAIFTAASKAQAAADWMHAQQPQAEELAA HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]