| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488106
Identifier: 103488106
GI number: 103488106
Start: 2767074
End: 2767391
Strand: Reverse
Name: 103488106
Synonym: Sala_2628
Alternate gene names: NA
Gene position: 2767391-2767074 (Counterclockwise)
Preceding gene: 103488108
Following gene: 103488104
Centisome position: 82.73
GC content: 64.47
Gene sequence:
>318_bases ATGGCAAAGATCGGCAGCTTCAGACAAGTTTCGGGTGAACTCCGGGGCCAGATCGTCACTCTCTCGGTTCAGGCCAAGTC GGTCCGCATCGTCGCGGACGAACAGGCCAGCGGCAATGCGCCCAGCCACCGGGTCTATGTCGGCGACGTCGAGGTCGGTG CGGCCTGGAGCAAGCGGACCAGCGACGACCGGCCCTATCTCTCGGTCAAGCTCGATGATCCCAGCTTCGTCGCTCCCATC TTCGCGCAGCTCTTCGCAGGCGAGGATGGCGAACATGACCTGGTCTGGAACCGGCCTGCCCGCCGCGAGCGCGATTGA
Upstream 100 bases:
>100_bases TTCGCTGCGGGCCTTCGGCTGCGGCGCCGTTCGCCTGCCGGCTTGTCCAACGCATCGAGGCCGCGATCGGCGCGGGTTCG AAGCGAAAGGAACAGACATC
Downstream 100 bases:
>100_bases CGCTCGGAATGATCCGCCGGCTCTCACTGAGCCGGCGGACATCCCCATAAATGGGGATCCGCCTCCCTAGTTGTTGGAAT AGCCCGCAAAAACGCCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 105; Mature: 104
Protein sequence:
>105_residues MAKIGSFRQVSGELRGQIVTLSVQAKSVRIVADEQASGNAPSHRVYVGDVEVGAAWSKRTSDDRPYLSVKLDDPSFVAPI FAQLFAGEDGEHDLVWNRPARRERD
Sequences:
>Translated_105_residues MAKIGSFRQVSGELRGQIVTLSVQAKSVRIVADEQASGNAPSHRVYVGDVEVGAAWSKRTSDDRPYLSVKLDDPSFVAPI FAQLFAGEDGEHDLVWNRPARRERD >Mature_104_residues AKIGSFRQVSGELRGQIVTLSVQAKSVRIVADEQASGNAPSHRVYVGDVEVGAAWSKRTSDDRPYLSVKLDDPSFVAPIF AQLFAGEDGEHDLVWNRPARRERD
Specific function: Unknown
COG id: COG5489
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007948 [H]
Pfam domain/function: PF05284 DUF736 [H]
EC number: NA
Molecular weight: Translated: 11583; Mature: 11452
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIGSFRQVSGELRGQIVTLSVQAKSVRIVADEQASGNAPSHRVYVGDVEVGAAWSKRT CCCCCCHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCC SDDRPYLSVKLDDPSFVAPIFAQLFAGEDGEHDLVWNRPARRERD CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC >Mature Secondary Structure AKIGSFRQVSGELRGQIVTLSVQAKSVRIVADEQASGNAPSHRVYVGDVEVGAAWSKRT CCCCCHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCC SDDRPYLSVKLDDPSFVAPIFAQLFAGEDGEHDLVWNRPARRERD CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]