Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488095

Identifier: 103488095

GI number: 103488095

Start: 2757835

End: 2758287

Strand: Reverse

Name: 103488095

Synonym: Sala_2617

Alternate gene names: NA

Gene position: 2758287-2757835 (Counterclockwise)

Preceding gene: 103488096

Following gene: 103488093

Centisome position: 82.46

GC content: 64.9

Gene sequence:

>453_bases
GTGAGTGGAGGCCACGTCAAGCGCAGCATCCGGCTACGGGCTGATCTGGTGCGCCGTCTCGCCGATCACGCCGCCGCGCG
GAACGCCAGCCAGGCCGCGATCATCGAGGCTGCGCTGGAGTCCTTTCTGTCGCCCGATGCTGCCGAGCGACTTGAAGGAG
CGCTTGCCCGCCGGCTCGACCGGCTGACCCGTGATCTTGGCCGCCTCGAATGGCATGTCGAACTGTCGAACGAGACTCTC
GCGCTGTTTGTGCGAAACTGGCTCAATGCGACGCCATCGCTCCCGGATGGCGCTACGCAGGCCGCGAGGGCGCAGGGTCG
TCAGCGATGGGAGCGGTTTGTAGACATGCTGAACCGGCGCATGGAGCTTGGGCCGCGGTTCAGGAACGAGATCGCTGAAG
ATGTAACGAGGTCGACTCGGTCGGATCAGGACTCGGGCAGCACCAGTGAATAG

Upstream 100 bases:

>100_bases
ATCAGGATGAGGATTCCGCACGGGCGAAACGCGAGGCGGAGCGGACCATGCGCCGCAATGCCCGTAACGCGTCGCTCGAC
CCGGATGACGGCATCGTGCT

Downstream 100 bases:

>100_bases
CTGGTGCTGCGCCCACCGGCCGGCTCCTTCTCAAGGATGCCGCGCCGGAGCAAATCGTTGATGTCGCGCAGGGCGGTATC
GGACGATGCCTTGGTGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSGGHVKRSIRLRADLVRRLADHAAARNASQAAIIEAALESFLSPDAAERLEGALARRLDRLTRDLGRLEWHVELSNETL
ALFVRNWLNATPSLPDGATQAARAQGRQRWERFVDMLNRRMELGPRFRNEIAEDVTRSTRSDQDSGSTSE

Sequences:

>Translated_150_residues
MSGGHVKRSIRLRADLVRRLADHAAARNASQAAIIEAALESFLSPDAAERLEGALARRLDRLTRDLGRLEWHVELSNETL
ALFVRNWLNATPSLPDGATQAARAQGRQRWERFVDMLNRRMELGPRFRNEIAEDVTRSTRSDQDSGSTSE
>Mature_149_residues
SGGHVKRSIRLRADLVRRLADHAAARNASQAAIIEAALESFLSPDAAERLEGALARRLDRLTRDLGRLEWHVELSNETLA
LFVRNWLNATPSLPDGATQAARAQGRQRWERFVDMLNRRMELGPRFRNEIAEDVTRSTRSDQDSGSTSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16891; Mature: 16760

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGHVKRSIRLRADLVRRLADHAAARNASQAAIIEAALESFLSPDAAERLEGALARRLD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RLTRDLGRLEWHVELSNETLALFVRNWLNATPSLPDGATQAARAQGRQRWERFVDMLNRR
HHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MELGPRFRNEIAEDVTRSTRSDQDSGSTSE
HHCCHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SGGHVKRSIRLRADLVRRLADHAAARNASQAAIIEAALESFLSPDAAERLEGALARRLD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RLTRDLGRLEWHVELSNETLALFVRNWLNATPSLPDGATQAARAQGRQRWERFVDMLNRR
HHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MELGPRFRNEIAEDVTRSTRSDQDSGSTSE
HHCCHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA