| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488071
Identifier: 103488071
GI number: 103488071
Start: 2734387
End: 2734776
Strand: Reverse
Name: 103488071
Synonym: Sala_2593
Alternate gene names: NA
Gene position: 2734776-2734387 (Counterclockwise)
Preceding gene: 103488072
Following gene: 103488053
Centisome position: 81.75
GC content: 63.85
Gene sequence:
>390_bases GTGAGCGAAGCCGTCCTCGATGCGTCGGCGCTGTTGGCATTGCTGAAGGAAGAGGCTGGAGCGGCAAAGGTGGCGGATGC GATCGCCGCGTCGCGGATGACCTCGGTCAATTACGCCGAGGTGGTGAGCCATTTCATTCATGCGGGCATGCCTGCGAATG AAGTCGATGCCATGCTGCATCCCCTGCCGATGGAGATAGTCGAAGCAGACCAGGCCTTGGCGACCATCGCCGGGAGGCTG AGGGCCGTGACCGTCGAGGCGGGCCTGTCCCTTGGCGAAAGATTCTGCCTGGCGCTCGCGCTGCGCGACGGGTTGCCCGC TCTCACGGCGGACAAGACGTGGCGGACGATAGCGGATGCTGCCGGGGTGAAAGTCCAGGTCATTCGATAG
Upstream 100 bases:
>100_bases CGATCGCGCATGCGCAGGCGCTCGCGAAAAAATACACCGCCGGAAAGCCCGAGGCGTCGGTTGATGCGTTCCTCGCGGGC CGTCGCGAGGACTCCGGCGA
Downstream 100 bases:
>100_bases GCAGGCATCAATCGCGGCCCCTGAAGCGCCTGAACCGTGCCTTCGCATCGGCCTCCTCGATCGCCAGGCCCGCATTCGCA CATTCTTCGCCGCGCACGGT
Product: PilT protein-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MSEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLHPLPMEIVEADQALATIAGRL RAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADAAGVKVQVIR
Sequences:
>Translated_129_residues MSEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLHPLPMEIVEADQALATIAGRL RAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADAAGVKVQVIR >Mature_128_residues SEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLHPLPMEIVEADQALATIAGRLR AVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADAAGVKVQVIR
Specific function: Unknown
COG id: COG4374
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13477; Mature: 13346
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLH CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC PLPMEIVEADQALATIAGRLRAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADA CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC AGVKVQVIR CCCEEEEEC >Mature Secondary Structure SEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLH CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC PLPMEIVEADQALATIAGRLRAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADA CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC AGVKVQVIR CCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA