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The map label for this gene is ybbI [C]

Identifier: 103488036

GI number: 103488036

Start: 2698368

End: 2698787

Strand: Reverse

Name: ybbI [C]

Synonym: Sala_2558

Alternate gene names: 103488036

Gene position: 2698787-2698368 (Counterclockwise)

Preceding gene: 103488040

Following gene: 103488035

Centisome position: 80.68

GC content: 66.19

Gene sequence:

>420_bases
ATGATCAAGCGGCTGGCGATCGGTGATCTGGCGCGGCAGACCGGAACCAAGGTCAACACGATCCGCTTCTATGAGGAGAT
CGGCCTCCTCCCGCGGGCCATGCGTACCGCCTCGGGACGACGAACCTATGGCACAGCGGACGTGCGCCGCCTCGCCTTCA
TCCGGCACGGTCGTGGCCTTGGCTTCTCGGTCGAGGAGGTCCGCTCACTCCTGGCACTTGCCGACGAACCGGAACGCGAC
TGTGCCGAGGCGGCGGCAATTGCACGCCGCCATCTTCGGGACATCGCCATGCGCATCGCACAGCTTGAGACGCTGCGTGA
TGCGCTCGCCGAGGTCGCTGTTTCCTGTGAGGGCGGCCGCGCGGCCGATTGCCGCGTGATCGAAGCGATTGCTGGCGCAG
AACTGTCGGTCGAGGCCTGA

Upstream 100 bases:

>100_bases
GCCCGAGGGCGGGCGTGAAACGCACATCTGGCGATGCTGGCCTTTCGGTCCGGGACATGCATAGGCTATACAATCTCCAG
TAACTGGAGGATCAAGAGGC

Downstream 100 bases:

>100_bases
TCCAGGGAGAAGGCGATGAACTTGGCGGCCGAGCAACGCAAGATCATCCGACGAGCCACTGCGGCCATCGCCTTTTGCGC
GCTGGTGCTTGCCGGCAGCT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MIKRLAIGDLARQTGTKVNTIRFYEEIGLLPRAMRTASGRRTYGTADVRRLAFIRHGRGLGFSVEEVRSLLALADEPERD
CAEAAAIARRHLRDIAMRIAQLETLRDALAEVAVSCEGGRAADCRVIEAIAGAELSVEA

Sequences:

>Translated_139_residues
MIKRLAIGDLARQTGTKVNTIRFYEEIGLLPRAMRTASGRRTYGTADVRRLAFIRHGRGLGFSVEEVRSLLALADEPERD
CAEAAAIARRHLRDIAMRIAQLETLRDALAEVAVSCEGGRAADCRVIEAIAGAELSVEA
>Mature_139_residues
MIKRLAIGDLARQTGTKVNTIRFYEEIGLLPRAMRTASGRRTYGTADVRRLAFIRHGRGLGFSVEEVRSLLALADEPERD
CAEAAAIARRHLRDIAMRIAQLETLRDALAEVAVSCEGGRAADCRVIEAIAGAELSVEA

Specific function: Could be a copper-dependent transcriptional activator of the ATPase HI_0290 [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=131, Percent_Identity=37.4045801526718, Blast_Score=94, Evalue=3e-21,
Organism=Escherichia coli, GI1789687, Length=127, Percent_Identity=36.2204724409449, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15178; Mature: 15178

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRLAIGDLARQTGTKVNTIRFYEEIGLLPRAMRTASGRRTYGTADVRRLAFIRHGRGL
CCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
GFSVEEVRSLLALADEPERDCAEAAAIARRHLRDIAMRIAQLETLRDALAEVAVSCEGGR
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AADCRVIEAIAGAELSVEA
CCHHHHHHHHHCCCEECCC
>Mature Secondary Structure
MIKRLAIGDLARQTGTKVNTIRFYEEIGLLPRAMRTASGRRTYGTADVRRLAFIRHGRGL
CCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
GFSVEEVRSLLALADEPERDCAEAAAIARRHLRDIAMRIAQLETLRDALAEVAVSCEGGR
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AADCRVIEAIAGAELSVEA
CCHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]