| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488031
Identifier: 103488031
GI number: 103488031
Start: 2692826
End: 2693254
Strand: Reverse
Name: 103488031
Synonym: Sala_2553
Alternate gene names: NA
Gene position: 2693254-2692826 (Counterclockwise)
Preceding gene: 103488035
Following gene: 103488030
Centisome position: 80.51
GC content: 59.67
Gene sequence:
>429_bases TTGGGAATAGCCGGTGTTCGGGCGCCCAAGCTTGACTCGATTCAGCAACAGGCAGAGAATGTCTGTATGGGACGAGCGCG AAAATTTGCGCTGATCTTAGGCGTCTTACTCGGCCTGTTCGGACAGATTGTCACAGTCGCCGCAAGTCCTGCTGTGGCAA CGTCCATGAGCGCAACCGCGCCAGCGACGATGCCGATGGACTGCGCCGGAATGATGCCAGGCGATGGTGAGGAGTCGCTG CCCTGCCAGCGGATGACGCTTGCTTGCCTGGCCGGCATGGGTTGTCTCCCCCTGTTTGCGCTCGATAGCCGCTCATCGCC ACTTCCGGAAATGGTGAGCACGGATCTGCTTGTCATCTCGCCATTTTATCCGGCGCTACATGGACGATCGGCTCAGCCCG AACAGCATCCACCCAACGCCTTGGCCTGA
Upstream 100 bases:
>100_bases CGCGAAGTCATCGAACGCAGCGCATGAACTGGTGGATGTCTCACCGCGGAAGTGACATTCCAAAGGTAGCAAACCCGCAG ATTATGGCGGGCCCGCGGGC
Downstream 100 bases:
>100_bases AAATTCGTCAGGCGAACGCTTCCGAACGCTGGACAGCGCCGCGCGCTGCCCACCCCTTCGGGGCCGGTTTGCCCGAGGCA CTTTCAGTCCAAGGAGAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 141
Protein sequence:
>142_residues MGIAGVRAPKLDSIQQQAENVCMGRARKFALILGVLLGLFGQIVTVAASPAVATSMSATAPATMPMDCAGMMPGDGEESL PCQRMTLACLAGMGCLPLFALDSRSSPLPEMVSTDLLVISPFYPALHGRSAQPEQHPPNALA
Sequences:
>Translated_142_residues MGIAGVRAPKLDSIQQQAENVCMGRARKFALILGVLLGLFGQIVTVAASPAVATSMSATAPATMPMDCAGMMPGDGEESL PCQRMTLACLAGMGCLPLFALDSRSSPLPEMVSTDLLVISPFYPALHGRSAQPEQHPPNALA >Mature_141_residues GIAGVRAPKLDSIQQQAENVCMGRARKFALILGVLLGLFGQIVTVAASPAVATSMSATAPATMPMDCAGMMPGDGEESLP CQRMTLACLAGMGCLPLFALDSRSSPLPEMVSTDLLVISPFYPALHGRSAQPEQHPPNALA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14725; Mature: 14593
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 7.0 %Met (Translated Protein) 10.6 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 6.4 %Met (Mature Protein) 9.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIAGVRAPKLDSIQQQAENVCMGRARKFALILGVLLGLFGQIVTVAASPAVATSMSATA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC PATMPMDCAGMMPGDGEESLPCQRMTLACLAGMGCLPLFALDSRSSPLPEMVSTDLLVIS CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEECCCCCCCHHHHCCCEEEEC PFYPALHGRSAQPEQHPPNALA CCCHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure GIAGVRAPKLDSIQQQAENVCMGRARKFALILGVLLGLFGQIVTVAASPAVATSMSATA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC PATMPMDCAGMMPGDGEESLPCQRMTLACLAGMGCLPLFALDSRSSPLPEMVSTDLLVIS CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEECCCCCCCHHHHCCCEEEEC PFYPALHGRSAQPEQHPPNALA CCCHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA