Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is btuB [C]

Identifier: 103487984

GI number: 103487984

Start: 2640552

End: 2642795

Strand: Reverse

Name: btuB [C]

Synonym: Sala_2505

Alternate gene names: 103487984

Gene position: 2642795-2640552 (Counterclockwise)

Preceding gene: 103487985

Following gene: 103487983

Centisome position: 79.0

GC content: 66.13

Gene sequence:

>2244_bases
ATGGGACGCAAGGCGCAGCTTCTTTTCGGTACGGCCGCGCTCTGGGTGGCGGCGGCCGCGCCCGCTTCCGCCCAAGATCG
GGCTCCCGAGGCTCTTCCGGCCGATACGGCGGCGGAAGCGGGCGATGACGGCGCGATCGTCGTCACCGCGCGGCGCCGCG
AGGAACGCCTGTCCGATGTGCCGACCGCGGCATCGGTGATCGACGCGACGGCGCTCAACGATCGCGGCGGGGCGACGGGA
AGCGGCGAACTCCTCGCCGACCAGCCGAGCGTGCGCTTCAACAATCTCAGCTCGTCGATCACGTCCGAAATTTCGATCCG
CGCGTCGTCGACGGCGCGCGCGACCAACGGTGACCCGAGCGTCGGCCTCTATCGCAACGGCGCCTATATCGCGGGCGGTC
CGGTCGGCGGGCGCAACTTCACGCGCCTCGATATGCTCGACATCGGCCGCGTCGAGGTGCTGCGCGGGACGCAGGGTGCG
CTCTACGGCCGCAACGCGGTCGGCGGCGCGATCAACATCATATCGGCCGAGCCCGAATTCGACCTGTCGGGTTGGGCCAG
CGTGCGATACGGGTTCGAGAACAACAGCCTGCAATTGCAGGGCGCGGTGAATATGCCGCTGGGCGACGGGATCGCGGCGC
GGATCAGCGGCGATCTGGTCGAACAGGACAAGGGCTTTTTCTACAACCCCGACAACGACGTCTATTTCGACCGGCAGAAG
GGGCATGGCCTGCGCGGGCAGATCCGCCTGAAGCGCGGACCGGTCGACGCGGTGATCATGGCCGAGACGCAGCGGCTGAC
GACGCCGTCGATCCATTATCAGATCTTCATTCCGGCCGGCACGCCGGGCTTTCCGGGCGGCTATATCCAGGACCGTTTCC
GTTATCCGTGGAGCACCGCGCCGCGGGCGTCGCAGGACGTCGACGGGTTGCAGGCGATCGTGCGTGTCGATCTTGGCGGA
GCCGACCTCACCTCGACGACCTCCTTCCGCAAGCGACACAGCGAATATGATCTCGACAATGATGCGGTCAGCCCCGCCGA
ACTGGCGCGTGCGCGCGCCGCGGGCGAAGTCGGGCCGCTGACCCCGCTCGACCCGGGCAGCGCGTCCTATGTGGTCGATA
CGACCGACAATTTCTCGCAGGATATCCATGTCAGCGGATCGAACGACCGGCTGACCTGGCTGGTGGGGGCGGAAATGCTC
CTCCTCGACAGCGATTTTTCGGTGACGACGACGCGCACGCCGACGCTCGCCAACCCGTCGCCGGGCAATATCGCGCCCGC
GCGGCTCCATTTCGAAAGCTATGCCGCCTATGGTTCGCTCGGCTTCGACCTGACCGACAGCCTCAATATCACCGGCGAAT
TGCGCTATACGCACGACAGCCGCAGCATCAGCGCGCGGCTCTATGATCTCGGCACCGGGCTCCCGACCGGCGGGCCCTCG
CGGATCATCGACGACAGCATCACCGCCGACAATCTCTCCTACAATGCGACGCTGTCGTACAAGCTGGCACCCGACATCCT
CGCTTATGCCAAGGTCGGGAGCAGCTATCGCGCTGGCGGCTTCAACACGCGCTTGTCCGACCCGCGCGCGCCGAGCCCGG
TGCAGGTGTTGTTCGGCAACGAAAACAGCACCAGCTACGAGGTCGGTTTCAAGGGTAGCCCGATGCGGCGCGGCTATTTT
GCGGTCGCGGGCTATTATACCCAGCTCGACGATCTGATCGCGCAGGTCGACGACGGCTGCGCGCTGACCAACCCCACCTG
CCCGGTCGCGGCGGTGAGCTATCTCACCAACGCGGGCGATGCGAAGAGCTGGGGCGTCGAAGCCGAATACAGCCAGGGCT
TCGACCTTGGCCAAGGCAGCGGGCGTCTGGCGCTGAGCGGGTCGCGGCAGGGCGGCAAGGTGAAGAGCGGGCGTTACGAC
GGGCTCGACCTCGCGCAGGTGCCCGACTGGCTCGCTTCGGCGAACCTCAACCTGCGCGCCCCGGTCGCGAAAAATGTTTC
GCTGACCGGCAACATCCTGGTCAGCGGCCAATGGGGCGGGAAGCAGGAACTGACCGCGACCTCGGTCGACCTCGACGACT
ATGTGCTCGTCAACCTGCGCGTCGGGGTCGAGTTCGGGAAGGTGAGCATCAGCGCCTTCGCGAACAACCTCTTCGACAAG
GTCTACTATGTCGCGCAGGCGCCGACGATCAACCGCTACAGCCAGCCGCGAGTGATCGGGGTCGAAGGACGTATCTCCTT
CTGA

Upstream 100 bases:

>100_bases
TGACCGGCGTCGCCGCGAGGGCGATGTTTCCGGCTTGACTCGCGTCGCCATATGCACAAAATTATCGATAATAATTGCAA
TAACGACATGGGAGGGATTT

Downstream 100 bases:

>100_bases
TCCGGCGGCCGCCGCGCCGCGTTCAGCGGCGCCTCCTTTCGAAACGTGCAACGAAGAGGATGGGAGAGACGATATGGTTG
AACGAAAGACATGGGCGTGG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Domain Protein; Nb-Dependent Receptor; NB-Dependent Siderophore Receptor; NB-Dependent Receptor Protein; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Plug Domain Protein; NB Dependent Receptor; Transporter OMR Family; Receptor -Mostly Fe Transport; Outer Membrane Protein; Outer Membrane Receptor For Iron Transport; NB-Dependent Siderophore Receptor Protein

Number of amino acids: Translated: 747; Mature: 746

Protein sequence:

>747_residues
MGRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDVPTAASVIDATALNDRGGATG
SGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPSVGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGA
LYGRNAVGGAINIISAEPEFDLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK
GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTAPRASQDVDGLQAIVRVDLGG
ADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPLTPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEML
LLDSDFSVTTTRTPTLANPSPGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS
RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGNENSTSYEVGFKGSPMRRGYF
AVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGDAKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYD
GLDLAQVPDWLASANLNLRAPVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK
VYYVAQAPTINRYSQPRVIGVEGRISF

Sequences:

>Translated_747_residues
MGRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDVPTAASVIDATALNDRGGATG
SGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPSVGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGA
LYGRNAVGGAINIISAEPEFDLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK
GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTAPRASQDVDGLQAIVRVDLGG
ADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPLTPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEML
LLDSDFSVTTTRTPTLANPSPGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS
RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGNENSTSYEVGFKGSPMRRGYF
AVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGDAKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYD
GLDLAQVPDWLASANLNLRAPVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK
VYYVAQAPTINRYSQPRVIGVEGRISF
>Mature_746_residues
GRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDVPTAASVIDATALNDRGGATGS
GELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPSVGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGAL
YGRNAVGGAINIISAEPEFDLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQKG
HGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTAPRASQDVDGLQAIVRVDLGGA
DLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPLTPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEMLL
LDSDFSVTTTRTPTLANPSPGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPSR
IIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGNENSTSYEVGFKGSPMRRGYFA
VAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGDAKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYDG
LDLAQVPDWLASANLNLRAPVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDKV
YYVAQAPTINRYSQPRVIGVEGRISF

Specific function: Cobalamin Receptor Protein. Also Acts As A Receptor For Bacteriophage Bf23 And Is Necessary For The Uptake Of E Colicins. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79405; Mature: 79274

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDV
CCCCEEEEEEHHHHHHEECCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCHHHHHHCC
PTAASVIDATALNDRGGATGSGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPS
CCHHHHHHHEEECCCCCCCCCCCEEECCCCCEECCCCHHCCCEEEEEECCCCCCCCCCCC
VGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGALYGRNAVGGAINIISAEPEF
EEEEECCCEEECCCCCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCEEEEEECCCCC
DLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK
CCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEECCC
GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTA
CCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCC
PRASQDVDGLQAIVRVDLGGADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPL
CCCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC
TPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEMLLLDSDFSVTTTRTPTLANPS
CCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCCCCC
PGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS
CCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCC
RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGN
CEECCCCCCCCEEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC
ENSTSYEVGFKGSPMRRGYFAVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGD
CCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCC
AKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYDGLDLAQVPDWLASANLNLRA
CCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHCCCEEEC
PVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK
CCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEEEEEEECEEEHHHHHHHHHHH
VYYVAQAPTINRYSQPRVIGVEGRISF
EEEEECCCCCCCCCCCCEEEECCEECC
>Mature Secondary Structure 
GRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDV
CCCEEEEEEHHHHHHEECCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCHHHHHHCC
PTAASVIDATALNDRGGATGSGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPS
CCHHHHHHHEEECCCCCCCCCCCEEECCCCCEECCCCHHCCCEEEEEECCCCCCCCCCCC
VGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGALYGRNAVGGAINIISAEPEF
EEEEECCCEEECCCCCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCEEEEEECCCCC
DLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK
CCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEECCC
GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTA
CCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCC
PRASQDVDGLQAIVRVDLGGADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPL
CCCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC
TPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEMLLLDSDFSVTTTRTPTLANPS
CCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCCCCC
PGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS
CCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCC
RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGN
CEECCCCCCCCEEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC
ENSTSYEVGFKGSPMRRGYFAVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGD
CCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCC
AKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYDGLDLAQVPDWLASANLNLRA
CCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHCCCEEEC
PVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK
CCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEEEEEEECEEEHHHHHHHHHHH
VYYVAQAPTINRYSQPRVIGVEGRISF
EEEEECCCCCCCCCCCCEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA