| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is btuB [C]
Identifier: 103487984
GI number: 103487984
Start: 2640552
End: 2642795
Strand: Reverse
Name: btuB [C]
Synonym: Sala_2505
Alternate gene names: 103487984
Gene position: 2642795-2640552 (Counterclockwise)
Preceding gene: 103487985
Following gene: 103487983
Centisome position: 79.0
GC content: 66.13
Gene sequence:
>2244_bases ATGGGACGCAAGGCGCAGCTTCTTTTCGGTACGGCCGCGCTCTGGGTGGCGGCGGCCGCGCCCGCTTCCGCCCAAGATCG GGCTCCCGAGGCTCTTCCGGCCGATACGGCGGCGGAAGCGGGCGATGACGGCGCGATCGTCGTCACCGCGCGGCGCCGCG AGGAACGCCTGTCCGATGTGCCGACCGCGGCATCGGTGATCGACGCGACGGCGCTCAACGATCGCGGCGGGGCGACGGGA AGCGGCGAACTCCTCGCCGACCAGCCGAGCGTGCGCTTCAACAATCTCAGCTCGTCGATCACGTCCGAAATTTCGATCCG CGCGTCGTCGACGGCGCGCGCGACCAACGGTGACCCGAGCGTCGGCCTCTATCGCAACGGCGCCTATATCGCGGGCGGTC CGGTCGGCGGGCGCAACTTCACGCGCCTCGATATGCTCGACATCGGCCGCGTCGAGGTGCTGCGCGGGACGCAGGGTGCG CTCTACGGCCGCAACGCGGTCGGCGGCGCGATCAACATCATATCGGCCGAGCCCGAATTCGACCTGTCGGGTTGGGCCAG CGTGCGATACGGGTTCGAGAACAACAGCCTGCAATTGCAGGGCGCGGTGAATATGCCGCTGGGCGACGGGATCGCGGCGC GGATCAGCGGCGATCTGGTCGAACAGGACAAGGGCTTTTTCTACAACCCCGACAACGACGTCTATTTCGACCGGCAGAAG GGGCATGGCCTGCGCGGGCAGATCCGCCTGAAGCGCGGACCGGTCGACGCGGTGATCATGGCCGAGACGCAGCGGCTGAC GACGCCGTCGATCCATTATCAGATCTTCATTCCGGCCGGCACGCCGGGCTTTCCGGGCGGCTATATCCAGGACCGTTTCC GTTATCCGTGGAGCACCGCGCCGCGGGCGTCGCAGGACGTCGACGGGTTGCAGGCGATCGTGCGTGTCGATCTTGGCGGA GCCGACCTCACCTCGACGACCTCCTTCCGCAAGCGACACAGCGAATATGATCTCGACAATGATGCGGTCAGCCCCGCCGA ACTGGCGCGTGCGCGCGCCGCGGGCGAAGTCGGGCCGCTGACCCCGCTCGACCCGGGCAGCGCGTCCTATGTGGTCGATA CGACCGACAATTTCTCGCAGGATATCCATGTCAGCGGATCGAACGACCGGCTGACCTGGCTGGTGGGGGCGGAAATGCTC CTCCTCGACAGCGATTTTTCGGTGACGACGACGCGCACGCCGACGCTCGCCAACCCGTCGCCGGGCAATATCGCGCCCGC GCGGCTCCATTTCGAAAGCTATGCCGCCTATGGTTCGCTCGGCTTCGACCTGACCGACAGCCTCAATATCACCGGCGAAT TGCGCTATACGCACGACAGCCGCAGCATCAGCGCGCGGCTCTATGATCTCGGCACCGGGCTCCCGACCGGCGGGCCCTCG CGGATCATCGACGACAGCATCACCGCCGACAATCTCTCCTACAATGCGACGCTGTCGTACAAGCTGGCACCCGACATCCT CGCTTATGCCAAGGTCGGGAGCAGCTATCGCGCTGGCGGCTTCAACACGCGCTTGTCCGACCCGCGCGCGCCGAGCCCGG TGCAGGTGTTGTTCGGCAACGAAAACAGCACCAGCTACGAGGTCGGTTTCAAGGGTAGCCCGATGCGGCGCGGCTATTTT GCGGTCGCGGGCTATTATACCCAGCTCGACGATCTGATCGCGCAGGTCGACGACGGCTGCGCGCTGACCAACCCCACCTG CCCGGTCGCGGCGGTGAGCTATCTCACCAACGCGGGCGATGCGAAGAGCTGGGGCGTCGAAGCCGAATACAGCCAGGGCT TCGACCTTGGCCAAGGCAGCGGGCGTCTGGCGCTGAGCGGGTCGCGGCAGGGCGGCAAGGTGAAGAGCGGGCGTTACGAC GGGCTCGACCTCGCGCAGGTGCCCGACTGGCTCGCTTCGGCGAACCTCAACCTGCGCGCCCCGGTCGCGAAAAATGTTTC GCTGACCGGCAACATCCTGGTCAGCGGCCAATGGGGCGGGAAGCAGGAACTGACCGCGACCTCGGTCGACCTCGACGACT ATGTGCTCGTCAACCTGCGCGTCGGGGTCGAGTTCGGGAAGGTGAGCATCAGCGCCTTCGCGAACAACCTCTTCGACAAG GTCTACTATGTCGCGCAGGCGCCGACGATCAACCGCTACAGCCAGCCGCGAGTGATCGGGGTCGAAGGACGTATCTCCTT CTGA
Upstream 100 bases:
>100_bases TGACCGGCGTCGCCGCGAGGGCGATGTTTCCGGCTTGACTCGCGTCGCCATATGCACAAAATTATCGATAATAATTGCAA TAACGACATGGGAGGGATTT
Downstream 100 bases:
>100_bases TCCGGCGGCCGCCGCGCCGCGTTCAGCGGCGCCTCCTTTCGAAACGTGCAACGAAGAGGATGGGAGAGACGATATGGTTG AACGAAAGACATGGGCGTGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Domain Protein; Nb-Dependent Receptor; NB-Dependent Siderophore Receptor; NB-Dependent Receptor Protein; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Plug Domain Protein; NB Dependent Receptor; Transporter OMR Family; Receptor -Mostly Fe Transport; Outer Membrane Protein; Outer Membrane Receptor For Iron Transport; NB-Dependent Siderophore Receptor Protein
Number of amino acids: Translated: 747; Mature: 746
Protein sequence:
>747_residues MGRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDVPTAASVIDATALNDRGGATG SGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPSVGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGA LYGRNAVGGAINIISAEPEFDLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTAPRASQDVDGLQAIVRVDLGG ADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPLTPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEML LLDSDFSVTTTRTPTLANPSPGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGNENSTSYEVGFKGSPMRRGYF AVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGDAKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYD GLDLAQVPDWLASANLNLRAPVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK VYYVAQAPTINRYSQPRVIGVEGRISF
Sequences:
>Translated_747_residues MGRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDVPTAASVIDATALNDRGGATG SGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPSVGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGA LYGRNAVGGAINIISAEPEFDLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTAPRASQDVDGLQAIVRVDLGG ADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPLTPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEML LLDSDFSVTTTRTPTLANPSPGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGNENSTSYEVGFKGSPMRRGYF AVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGDAKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYD GLDLAQVPDWLASANLNLRAPVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK VYYVAQAPTINRYSQPRVIGVEGRISF >Mature_746_residues GRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDVPTAASVIDATALNDRGGATGS GELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPSVGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGAL YGRNAVGGAINIISAEPEFDLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQKG HGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTAPRASQDVDGLQAIVRVDLGGA DLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPLTPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEMLL LDSDFSVTTTRTPTLANPSPGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPSR IIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGNENSTSYEVGFKGSPMRRGYFA VAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGDAKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYDG LDLAQVPDWLASANLNLRAPVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDKV YYVAQAPTINRYSQPRVIGVEGRISF
Specific function: Cobalamin Receptor Protein. Also Acts As A Receptor For Bacteriophage Bf23 And Is Necessary For The Uptake Of E Colicins. [C]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79405; Mature: 79274
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDV CCCCEEEEEEHHHHHHEECCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCHHHHHHCC PTAASVIDATALNDRGGATGSGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPS CCHHHHHHHEEECCCCCCCCCCCEEECCCCCEECCCCHHCCCEEEEEECCCCCCCCCCCC VGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGALYGRNAVGGAINIISAEPEF EEEEECCCEEECCCCCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCEEEEEECCCCC DLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK CCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEECCC GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTA CCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCC PRASQDVDGLQAIVRVDLGGADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPL CCCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC TPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEMLLLDSDFSVTTTRTPTLANPS CCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCCCCC PGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS CCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCC RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGN CEECCCCCCCCEEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC ENSTSYEVGFKGSPMRRGYFAVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGD CCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCC AKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYDGLDLAQVPDWLASANLNLRA CCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHCCCEEEC PVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK CCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEEEEEEECEEEHHHHHHHHHHH VYYVAQAPTINRYSQPRVIGVEGRISF EEEEECCCCCCCCCCCCEEEECCEECC >Mature Secondary Structure GRKAQLLFGTAALWVAAAAPASAQDRAPEALPADTAAEAGDDGAIVVTARRREERLSDV CCCEEEEEEHHHHHHEECCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCHHHHHHCC PTAASVIDATALNDRGGATGSGELLADQPSVRFNNLSSSITSEISIRASSTARATNGDPS CCHHHHHHHEEECCCCCCCCCCCEEECCCCCEECCCCHHCCCEEEEEECCCCCCCCCCCC VGLYRNGAYIAGGPVGGRNFTRLDMLDIGRVEVLRGTQGALYGRNAVGGAINIISAEPEF EEEEECCCEEECCCCCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCEEEEEECCCCC DLSGWASVRYGFENNSLQLQGAVNMPLGDGIAARISGDLVEQDKGFFYNPDNDVYFDRQK CCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEECCC GHGLRGQIRLKRGPVDAVIMAETQRLTTPSIHYQIFIPAGTPGFPGGYIQDRFRYPWSTA CCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCC PRASQDVDGLQAIVRVDLGGADLTSTTSFRKRHSEYDLDNDAVSPAELARARAAGEVGPL CCCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC TPLDPGSASYVVDTTDNFSQDIHVSGSNDRLTWLVGAEMLLLDSDFSVTTTRTPTLANPS CCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCCCCC PGNIAPARLHFESYAAYGSLGFDLTDSLNITGELRYTHDSRSISARLYDLGTGLPTGGPS CCCCCEEEEEEHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCC RIIDDSITADNLSYNATLSYKLAPDILAYAKVGSSYRAGGFNTRLSDPRAPSPVQVLFGN CEECCCCCCCCEEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC ENSTSYEVGFKGSPMRRGYFAVAGYYTQLDDLIAQVDDGCALTNPTCPVAAVSYLTNAGD CCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCC AKSWGVEAEYSQGFDLGQGSGRLALSGSRQGGKVKSGRYDGLDLAQVPDWLASANLNLRA CCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHCCCEEEC PVAKNVSLTGNILVSGQWGGKQELTATSVDLDDYVLVNLRVGVEFGKVSISAFANNLFDK CCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEEEEEEECEEEHHHHHHHHHHH VYYVAQAPTINRYSQPRVIGVEGRISF EEEEECCCCCCCCCCCCEEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA