Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487761
Identifier: 103487761
GI number: 103487761
Start: 2403015
End: 2404559
Strand: Direct
Name: 103487761
Synonym: Sala_2280
Alternate gene names: NA
Gene position: 2403015-2404559 (Clockwise)
Preceding gene: 103487760
Following gene: 103487765
Centisome position: 71.84
GC content: 63.95
Gene sequence:
>1545_bases ATGCGGAAAGCCACGATCGCCGTCATGGCGCTGATTGCAGCGATGACGACGACGGGTGCAGAGGCCAAGTGGCTGCGCGC CGACACCGACAATTTCATCATCTATAGCGAAAGCAGCGAGCGGTCGCTGCGCAGCTTTGCCGAAAAGCTGCAGCGTTTCG ACGCAACCTTGCGCGTCCGGCTCCGGATTCCGGGCGGGAAGGAGCCCAATCGGCTGACCATCTATCTGGTGCCCCGCGCC GCCGACGCGGGGCGGCTCGCGACCGGCGAGTCCGGATCGTCGATCGCGGGATTCTACAGCGCCGACCTCGACGGCAGCTT TGCGGTCTCGCATCGCGAGGTAATCGAGTTCAAGGGCACATCGGCGGCGCAGCAGACGCTGTTTCACGAATATACGCATC ATTTCATGAAGCGCTATTTCGCTGCGGCCTTTCCCGCCTGGTTCATCGAGGGTTTCGCCGAATTCTACTCGACCGCCGAT TTCACCGGCAAGGGTCAGTATCAGGTGGGTCGTCCCGCCTATTTCCGGGCGCACGGGCTGATCAACATGCCCCGCATTCC GGTGGCGGATCTGTTGCTGAAAAAACCGCGCGAAATGCGGTCGTCGGGCCAGATGGACGTTTACTACGGCCGTGCATGGC TGCTCACGCACATGCTTTATTACCATCCCGATCGCGCCGGTCAGCTGACCGCCTATATCGACGCGATCAATCGCGGCGAA GACGGAGAGAAAGCGGCGGTCGCGGCCTTCGGCGACCTCGTCGCGCTCGATCGCGACCTTCAGCGCTATCTTGGACGCCC ACTGACCTTCATGACATCGGCGGAGCCCATCCCCGTCCCCGGAACGGTCACGGTGACGGTGCTCCCCAATGCCGAGGATG CGCTGCTGCAATGGCGCCTCGAGCGGCGAAGCGCGCGAGGCGGTGAACGGCTGGCCGAGGTGCGTGACGAGCTGCGGAAA CTCACCGCCGAATATGGCGACAGCGCCGGCATCTGGTACGAACTGGCACGCGCCGAATGGGATCTGGGAGACGAGAAGCG CGACGCCGCGGCAGCGCGGGCCGCGGTCGACAAGGCGCTGGCGATCGAGCCGAAGCACGTTCGCGCCAATATATTATTGG GCGAAATGATGATCCACGACCTTGGCCATCGCGACACGGTTTCCAACGCGGACTGGGTGGCGGCACGTCAGCCGATCATC CTTGCCAACAACACCGATCCCGACGACCCTGTCCCGCTCTACGCCTATTATGACAGCTTTTTACGGCAGGGCATCACGCC GCCGAAGATTGCGGTCACCGGGCTGGAGCGCGCATTTGCGCTCGGTCCCGAAAGCGCCGACGCGCGCATCGCCTATGCGC TTGCCCTCGCGCACGACGGGGACCTCGATCGCGCGACCCGGCTGGCGAAGGTCGTTGCGTTCGACCCGCACGACGACGGA CAGGGCGAGAGGATTCTGGCACAGATCGAATCAATGCGCGAAAGGAGTGGCGGCACCGGAAAAGGCGCCGCCGCCCCGGT CGCACCCGCCGACGCCGATCAATAA
Upstream 100 bases:
>100_bases GACGTCGATCCCTATAGTTTCGTTTGAACGCCGCTATTTACATCGCTCCGGAGCGGCGTCAAAAGCTTGGTGGGGACCAT CAGGGCCGGGGGAACCGAAG
Downstream 100 bases:
>100_bases TCGGGTTCGCCGCCGCCCAGAACCTGTGCCGCCTGCGCGCCCAGCCACGCCATCGCGGCGGCCCAGGGCTGGTGTCCGTG GCTGATCCGCGCGACGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 514; Mature: 514
Protein sequence:
>514_residues MRKATIAVMALIAAMTTTGAEAKWLRADTDNFIIYSESSERSLRSFAEKLQRFDATLRVRLRIPGGKEPNRLTIYLVPRA ADAGRLATGESGSSIAGFYSADLDGSFAVSHREVIEFKGTSAAQQTLFHEYTHHFMKRYFAAAFPAWFIEGFAEFYSTAD FTGKGQYQVGRPAYFRAHGLINMPRIPVADLLLKKPREMRSSGQMDVYYGRAWLLTHMLYYHPDRAGQLTAYIDAINRGE DGEKAAVAAFGDLVALDRDLQRYLGRPLTFMTSAEPIPVPGTVTVTVLPNAEDALLQWRLERRSARGGERLAEVRDELRK LTAEYGDSAGIWYELARAEWDLGDEKRDAAAARAAVDKALAIEPKHVRANILLGEMMIHDLGHRDTVSNADWVAARQPII LANNTDPDDPVPLYAYYDSFLRQGITPPKIAVTGLERAFALGPESADARIAYALALAHDGDLDRATRLAKVVAFDPHDDG QGERILAQIESMRERSGGTGKGAAAPVAPADADQ
Sequences:
>Translated_514_residues MRKATIAVMALIAAMTTTGAEAKWLRADTDNFIIYSESSERSLRSFAEKLQRFDATLRVRLRIPGGKEPNRLTIYLVPRA ADAGRLATGESGSSIAGFYSADLDGSFAVSHREVIEFKGTSAAQQTLFHEYTHHFMKRYFAAAFPAWFIEGFAEFYSTAD FTGKGQYQVGRPAYFRAHGLINMPRIPVADLLLKKPREMRSSGQMDVYYGRAWLLTHMLYYHPDRAGQLTAYIDAINRGE DGEKAAVAAFGDLVALDRDLQRYLGRPLTFMTSAEPIPVPGTVTVTVLPNAEDALLQWRLERRSARGGERLAEVRDELRK LTAEYGDSAGIWYELARAEWDLGDEKRDAAAARAAVDKALAIEPKHVRANILLGEMMIHDLGHRDTVSNADWVAARQPII LANNTDPDDPVPLYAYYDSFLRQGITPPKIAVTGLERAFALGPESADARIAYALALAHDGDLDRATRLAKVVAFDPHDDG QGERILAQIESMRERSGGTGKGAAAPVAPADADQ >Mature_514_residues MRKATIAVMALIAAMTTTGAEAKWLRADTDNFIIYSESSERSLRSFAEKLQRFDATLRVRLRIPGGKEPNRLTIYLVPRA ADAGRLATGESGSSIAGFYSADLDGSFAVSHREVIEFKGTSAAQQTLFHEYTHHFMKRYFAAAFPAWFIEGFAEFYSTAD FTGKGQYQVGRPAYFRAHGLINMPRIPVADLLLKKPREMRSSGQMDVYYGRAWLLTHMLYYHPDRAGQLTAYIDAINRGE DGEKAAVAAFGDLVALDRDLQRYLGRPLTFMTSAEPIPVPGTVTVTVLPNAEDALLQWRLERRSARGGERLAEVRDELRK LTAEYGDSAGIWYELARAEWDLGDEKRDAAAARAAVDKALAIEPKHVRANILLGEMMIHDLGHRDTVSNADWVAARQPII LANNTDPDDPVPLYAYYDSFLRQGITPPKIAVTGLERAFALGPESADARIAYALALAHDGDLDRATRLAKVVAFDPHDDG QGERILAQIESMRERSGGTGKGAAAPVAPADADQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56681; Mature: 56681
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKATIAVMALIAAMTTTGAEAKWLRADTDNFIIYSESSERSLRSFAEKLQRFDATLRVR CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE LRIPGGKEPNRLTIYLVPRAADAGRLATGESGSSIAGFYSADLDGSFAVSHREVIEFKGT EECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEECHHHHEEECCC SAAQQTLFHEYTHHFMKRYFAAAFPAWFIEGFAEFYSTADFTGKGQYQVGRPAYFRAHGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEECCC INMPRIPVADLLLKKPREMRSSGQMDVYYGRAWLLTHMLYYHPDRAGQLTAYIDAINRGE CCCCCCCHHHHHHHCCHHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEEHHCCCC DGEKAAVAAFGDLVALDRDLQRYLGRPLTFMTSAEPIPVPGTVTVTVLPNAEDALLQWRL CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHH ERRSARGGERLAEVRDELRKLTAEYGDSAGIWYELARAEWDLGDEKRDAAAARAAVDKAL HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH AIEPKHVRANILLGEMMIHDLGHRDTVSNADWVAARQPIILANNTDPDDPVPLYAYYDSF CCCCCHHEEHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEECCCCCCCCEEHHHHHHHH LRQGITPPKIAVTGLERAFALGPESADARIAYALALAHDGDLDRATRLAKVVAFDPHDDG HHCCCCCCCEEEHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHEEECCCCCC QGERILAQIESMRERSGGTGKGAAAPVAPADADQ CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRKATIAVMALIAAMTTTGAEAKWLRADTDNFIIYSESSERSLRSFAEKLQRFDATLRVR CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE LRIPGGKEPNRLTIYLVPRAADAGRLATGESGSSIAGFYSADLDGSFAVSHREVIEFKGT EECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEECHHHHEEECCC SAAQQTLFHEYTHHFMKRYFAAAFPAWFIEGFAEFYSTADFTGKGQYQVGRPAYFRAHGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEECCC INMPRIPVADLLLKKPREMRSSGQMDVYYGRAWLLTHMLYYHPDRAGQLTAYIDAINRGE CCCCCCCHHHHHHHCCHHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEEHHCCCC DGEKAAVAAFGDLVALDRDLQRYLGRPLTFMTSAEPIPVPGTVTVTVLPNAEDALLQWRL CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHH ERRSARGGERLAEVRDELRKLTAEYGDSAGIWYELARAEWDLGDEKRDAAAARAAVDKAL HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH AIEPKHVRANILLGEMMIHDLGHRDTVSNADWVAARQPIILANNTDPDDPVPLYAYYDSF CCCCCHHEEHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEECCCCCCCCEEHHHHHHHH LRQGITPPKIAVTGLERAFALGPESADARIAYALALAHDGDLDRATRLAKVVAFDPHDDG HHCCCCCCCEEEHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHEEECCCCCC QGERILAQIESMRERSGGTGKGAAAPVAPADADQ CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA