| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is ptsP [H]
Identifier: 103487630
GI number: 103487630
Start: 2258079
End: 2260376
Strand: Direct
Name: ptsP [H]
Synonym: Sala_2149
Alternate gene names: 103487630
Gene position: 2258079-2260376 (Clockwise)
Preceding gene: 103487629
Following gene: 103487635
Centisome position: 67.5
GC content: 67.15
Gene sequence:
>2298_bases ATGACCAACGCCCCGCCCCCGCCCTCGACGGCCGCCCAGTCGGCGCGCACCATATTGACCCGGCTGCACGAGGTCATGGC GTCGCGTGCCAATGCGCAGGGCAAGCTCAATCAGGTCGTCGGGATCATCGGCGAATGCCTCGACAGCGAAGTCTGCTCGA TCTACCTGCTGCGCGACGGCGCGCTCGAACTTTATGCGACGCGCGGCCTCAAGCAGGAGGCGGTGCATGTCACACGCCTT GCGCCCGGCGAAGGGCTTGTGGGCACCATTGCCGAACATATCGAAACGCTCAATCTCGACGAAGCCGCAGCGCACCCCGA CTTTTCCTATCGCCCCGAAACGGGCGAGGAATTGTTCCACAGCTTTGCCGGGGTGCCGATCATCCGTCGCGAGCGCGCCG TTGGCGTCCTTTGCGTCCAGCACGCGGAACCGCGCCGTTATGAAGAGATCGAGATCGAGACGCTGCAAACGGTCGCGATG GTGCTGTCCGAACTGATCGCCAACGCCGACCTTGTCGATACCGCCGCACGCACCGACGCCGCGGCCGCCGACCAGTCGGC GCAGCGGCTGAACGGACAGAAGCTGGTCGACGGCATGGGCGCCGGGGTCGCGGTATTCCATCAGCCGCGCATCACCATCG AACATACGGTCGCCGACGATGTCGAGGCCGAACGCCACCGCGTCTACGCCGCCTTCGACAAGATGCGCGAACAGATCGAC CGCATGGCAAGCCAGGCCGAATTCGGCGTCGGCGGCGAGCATGAAGAGGTGCTCGAAACCTACAAGATGTTCGCCTATGA CGAAGGCTGGTCGCGGCGGATCAACGAAGCGATCGACAGCGGCCTGACCGCAGAGGCGGCGATCGAGCGCGTCCAGCAAC GCACGCGGATGCGGATGCGCCAGATCGACGATCCGCTGCTCCGCGACCGGATGCACGACCTCGAAGATCTGTCGAACCGG CTGATCCGCATCGTGTCCGGACAGATGGGCACCGCAGCGCAAATGGGGCTCCGGCAGGATTCGATCCTGATCGCACGCAA CCTCGGTCCGGCCGAACTGCTCGAATATGATCGCCGCCGCCTGAAAGGCGTCGTGCTCGAAGAAGGCTCGCTGACCGCCC ATGTCATCATCGTTGCGCGCGCGATGGGCGTCCCGGTCATCGGCCGCGTCCGCGACGTGCGCACCTCGATCCGCGAGGGC GACCTGCTGCTGCTCGATGCCAGCGCGGGCACTGTGCATGTCCGCCCGACGCCCGCGGTGCAGGAGGCTTTCAACGCCAA GCTCGCCATCTCGCAAAAGCGCCGCGCCGATCTTGCGGCGCTGCGCGACCTTCCTGCGGTCACCAGGGATGGGGTTCCGA TCGAGTTGATGATCAACGCCGGCCTGCGCGAGGATGTCGCTGCGCTCGACCTCACCGGCGCGCGCGGGATCGGGCTGTTC CGCACCGAGTTCCAGTTCCTCGTCTCGGCGACGCTGCCCGCGCGCGAACGGCAGCAGCGGCTGTATCGCGACGTGCTCGA TGCCGCGGGCGACCGCCCGGTCATCTTCCGCACCGTCGACATCGGCGGCGACAAGGCGCTGCCCTATATGAATGTTGGCG AAGGCGCGCAGGAGGAAAACCCGGCGATGGGCTGGCGCGCGCTCCGTCTCGCGCTCGACCGCGAAGGTCTTTTGAAGGTG CAGGCGCGCGCGCTGATGGAAGCCGCGGCCGGGCGTACGCTCAACGTCATGTTCCCGATGGTGTCGGAACCATGGGAATA TGAGGCGGCGCGCGCCTTGTTCGTCGGCCAGCGTGCCTGGCTCGCCAGCCACAACAAGAAGCTGCCGGTGGCGATCCGCT ATGGCGCGATGCTCGAGGTGCCCGGGCTGGTCGAAACGCTCGACCTGATGCTGCCGCACCTCGACTTCCTGTCGATCGGC ACCAACGACCTCACCCAGTTCCTCTTCGCCGCCGACCGGGCGCACCCGCGGCTCGCCGAACGCTACGACTGGCTGTCGCC GACGGTGATGCGCTATCTGGCGCGCGTGGTGAAGATCGTGTCGGGATCGAAGGTCGCGCTCGGCGTGTGCGGCGAAATGG GGGGACGCCCCCTGGAAGCCATGGCGCTGCTCGGTCTCGGCATCGAACGCCTGTCGATCACCCCCGCGGGCGTCGGCCCG GTCAAGGCGATGATCCGCTCGCTCGACCTCGGCGCGCTGCGCGCCGACATGCCCGCGATGCTGGCGCAGCCGGCGCCGGA CCCGCGCGGGCAGTATGAGCAATGGGCGCTCGCCCATCAGGTCGACCTGGGCACGTAA
Upstream 100 bases:
>100_bases CCGTCCGGCAGGTAGCGCGAGGTCCAGCGGGCCAGGAATCTATGGGGCGACCGTGCGCGACCTATTGGCGCGCGCCGCAA CCTTCTGATAGCAGGGAGCG
Downstream 100 bases:
>100_bases ATGCGCCACAGTCGGCCATAGTTGGGCTATTCCAGTCAGGTCGTCGCTGGCACGGTCGTGATCGCCGGGACCGCCTGCCC GTCGTTCGCGGTGCGAACGA
Product: phosphoenolpyruvate-protein phosphotransferase PtsP
Products: NA
Alternate protein names: Enzyme I-Ntr; Phosphotransferase system, enzyme I [H]
Number of amino acids: Translated: 765; Mature: 764
Protein sequence:
>765_residues MTNAPPPPSTAAQSARTILTRLHEVMASRANAQGKLNQVVGIIGECLDSEVCSIYLLRDGALELYATRGLKQEAVHVTRL APGEGLVGTIAEHIETLNLDEAAAHPDFSYRPETGEELFHSFAGVPIIRRERAVGVLCVQHAEPRRYEEIEIETLQTVAM VLSELIANADLVDTAARTDAAAADQSAQRLNGQKLVDGMGAGVAVFHQPRITIEHTVADDVEAERHRVYAAFDKMREQID RMASQAEFGVGGEHEEVLETYKMFAYDEGWSRRINEAIDSGLTAEAAIERVQQRTRMRMRQIDDPLLRDRMHDLEDLSNR LIRIVSGQMGTAAQMGLRQDSILIARNLGPAELLEYDRRRLKGVVLEEGSLTAHVIIVARAMGVPVIGRVRDVRTSIREG DLLLLDASAGTVHVRPTPAVQEAFNAKLAISQKRRADLAALRDLPAVTRDGVPIELMINAGLREDVAALDLTGARGIGLF RTEFQFLVSATLPARERQQRLYRDVLDAAGDRPVIFRTVDIGGDKALPYMNVGEGAQEENPAMGWRALRLALDREGLLKV QARALMEAAAGRTLNVMFPMVSEPWEYEAARALFVGQRAWLASHNKKLPVAIRYGAMLEVPGLVETLDLMLPHLDFLSIG TNDLTQFLFAADRAHPRLAERYDWLSPTVMRYLARVVKIVSGSKVALGVCGEMGGRPLEAMALLGLGIERLSITPAGVGP VKAMIRSLDLGALRADMPAMLAQPAPDPRGQYEQWALAHQVDLGT
Sequences:
>Translated_765_residues MTNAPPPPSTAAQSARTILTRLHEVMASRANAQGKLNQVVGIIGECLDSEVCSIYLLRDGALELYATRGLKQEAVHVTRL APGEGLVGTIAEHIETLNLDEAAAHPDFSYRPETGEELFHSFAGVPIIRRERAVGVLCVQHAEPRRYEEIEIETLQTVAM VLSELIANADLVDTAARTDAAAADQSAQRLNGQKLVDGMGAGVAVFHQPRITIEHTVADDVEAERHRVYAAFDKMREQID RMASQAEFGVGGEHEEVLETYKMFAYDEGWSRRINEAIDSGLTAEAAIERVQQRTRMRMRQIDDPLLRDRMHDLEDLSNR LIRIVSGQMGTAAQMGLRQDSILIARNLGPAELLEYDRRRLKGVVLEEGSLTAHVIIVARAMGVPVIGRVRDVRTSIREG DLLLLDASAGTVHVRPTPAVQEAFNAKLAISQKRRADLAALRDLPAVTRDGVPIELMINAGLREDVAALDLTGARGIGLF RTEFQFLVSATLPARERQQRLYRDVLDAAGDRPVIFRTVDIGGDKALPYMNVGEGAQEENPAMGWRALRLALDREGLLKV QARALMEAAAGRTLNVMFPMVSEPWEYEAARALFVGQRAWLASHNKKLPVAIRYGAMLEVPGLVETLDLMLPHLDFLSIG TNDLTQFLFAADRAHPRLAERYDWLSPTVMRYLARVVKIVSGSKVALGVCGEMGGRPLEAMALLGLGIERLSITPAGVGP VKAMIRSLDLGALRADMPAMLAQPAPDPRGQYEQWALAHQVDLGT >Mature_764_residues TNAPPPPSTAAQSARTILTRLHEVMASRANAQGKLNQVVGIIGECLDSEVCSIYLLRDGALELYATRGLKQEAVHVTRLA PGEGLVGTIAEHIETLNLDEAAAHPDFSYRPETGEELFHSFAGVPIIRRERAVGVLCVQHAEPRRYEEIEIETLQTVAMV LSELIANADLVDTAARTDAAAADQSAQRLNGQKLVDGMGAGVAVFHQPRITIEHTVADDVEAERHRVYAAFDKMREQIDR MASQAEFGVGGEHEEVLETYKMFAYDEGWSRRINEAIDSGLTAEAAIERVQQRTRMRMRQIDDPLLRDRMHDLEDLSNRL IRIVSGQMGTAAQMGLRQDSILIARNLGPAELLEYDRRRLKGVVLEEGSLTAHVIIVARAMGVPVIGRVRDVRTSIREGD LLLLDASAGTVHVRPTPAVQEAFNAKLAISQKRRADLAALRDLPAVTRDGVPIELMINAGLREDVAALDLTGARGIGLFR TEFQFLVSATLPARERQQRLYRDVLDAAGDRPVIFRTVDIGGDKALPYMNVGEGAQEENPAMGWRALRLALDREGLLKVQ ARALMEAAAGRTLNVMFPMVSEPWEYEAARALFVGQRAWLASHNKKLPVAIRYGAMLEVPGLVETLDLMLPHLDFLSIGT NDLTQFLFAADRAHPRLAERYDWLSPTVMRYLARVVKIVSGSKVALGVCGEMGGRPLEAMALLGLGIERLSITPAGVGPV KAMIRSLDLGALRADMPAMLAQPAPDPRGQYEQWALAHQVDLGT
Specific function: Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. Enzyme I- Ntr transfers the phosphoryl group from phosphoenolpyruvate (PEP)
COG id: COG3605
COG function: function code T; Signal transduction protein containing GAF and PtsI domains
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GAF domain [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=742, Percent_Identity=33.1536388140162, Blast_Score=335, Evalue=9e-93, Organism=Escherichia coli, GI1788756, Length=531, Percent_Identity=33.7099811676083, Blast_Score=298, Evalue=9e-82, Organism=Escherichia coli, GI1788726, Length=580, Percent_Identity=30.5172413793103, Blast_Score=254, Evalue=2e-68, Organism=Escherichia coli, GI48994992, Length=478, Percent_Identity=29.2887029288703, Blast_Score=222, Evalue=8e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003018 - InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR008731 - InterPro: IPR015813 [H]
Pfam domain/function: PF01590 GAF; PF05524 PEP-utilisers_N; PF00391 PEP-utilizers; PF02896 PEP-utilizers_C [H]
EC number: =2.7.3.9 [H]
Molecular weight: Translated: 83963; Mature: 83832
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNAPPPPSTAAQSARTILTRLHEVMASRANAQGKLNQVVGIIGECLDSEVCSIYLLRDG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEEEEEEECC ALELYATRGLKQEAVHVTRLAPGEGLVGTIAEHIETLNLDEAAAHPDFSYRPETGEELFH CEEEHHHCCCHHHHEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHH SFAGVPIIRRERAVGVLCVQHAEPRRYEEIEIETLQTVAMVLSELIANADLVDTAARTDA HHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AAADQSAQRLNGQKLVDGMGAGVAVFHQPRITIEHTVADDVEAERHRVYAAFDKMREQID HHHHHHHHHCCCHHHHHCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH RMASQAEFGVGGEHEEVLETYKMFAYDEGWSRRINEAIDSGLTAEAAIERVQQRTRMRMR HHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QIDDPLLRDRMHDLEDLSNRLIRIVSGQMGTAAQMGLRQDSILIARNLGPAELLEYDRRR HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHH LKGVVLEEGSLTAHVIIVARAMGVPVIGRVRDVRTSIREGDLLLLDASAGTVHVRPTPAV HCEEEEECCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCHHH QEAFNAKLAISQKRRADLAALRDLPAVTRDGVPIELMINAGLREDVAALDLTGARGIGLF HHHHCCCEEECHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCHHHHHEECCCCCCCCHH RTEFQFLVSATLPARERQQRLYRDVLDAAGDRPVIFRTVDIGGDKALPYMNVGEGAQEEN HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC PAMGWRALRLALDREGLLKVQARALMEAAAGRTLNVMFPMVSEPWEYEAARALFVGQRAW CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCHHH LASHNKKLPVAIRYGAMLEVPGLVETLDLMLPHLDFLSIGTNDLTQFLFAADRAHPRLAE HHCCCCCCCEEEECCCEEECCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCHHHHH RYDWLSPTVMRYLARVVKIVSGSKVALGVCGEMGGRPLEAMALLGLGIERLSITPAGVGP HHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCHHHEEECCCCCCH VKAMIRSLDLGALRADMPAMLAQPAPDPRGQYEQWALAHQVDLGT HHHHHHHCCHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure TNAPPPPSTAAQSARTILTRLHEVMASRANAQGKLNQVVGIIGECLDSEVCSIYLLRDG CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEEEEEEECC ALELYATRGLKQEAVHVTRLAPGEGLVGTIAEHIETLNLDEAAAHPDFSYRPETGEELFH CEEEHHHCCCHHHHEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHH SFAGVPIIRRERAVGVLCVQHAEPRRYEEIEIETLQTVAMVLSELIANADLVDTAARTDA HHCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AAADQSAQRLNGQKLVDGMGAGVAVFHQPRITIEHTVADDVEAERHRVYAAFDKMREQID HHHHHHHHHCCCHHHHHCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH RMASQAEFGVGGEHEEVLETYKMFAYDEGWSRRINEAIDSGLTAEAAIERVQQRTRMRMR HHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QIDDPLLRDRMHDLEDLSNRLIRIVSGQMGTAAQMGLRQDSILIARNLGPAELLEYDRRR HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHH LKGVVLEEGSLTAHVIIVARAMGVPVIGRVRDVRTSIREGDLLLLDASAGTVHVRPTPAV HCEEEEECCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCHHH QEAFNAKLAISQKRRADLAALRDLPAVTRDGVPIELMINAGLREDVAALDLTGARGIGLF HHHHCCCEEECHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCHHHHHEECCCCCCCCHH RTEFQFLVSATLPARERQQRLYRDVLDAAGDRPVIFRTVDIGGDKALPYMNVGEGAQEEN HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC PAMGWRALRLALDREGLLKVQARALMEAAAGRTLNVMFPMVSEPWEYEAARALFVGQRAW CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCHHH LASHNKKLPVAIRYGAMLEVPGLVETLDLMLPHLDFLSIGTNDLTQFLFAADRAHPRLAE HHCCCCCCCEEEECCCEEECCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCHHHHH RYDWLSPTVMRYLARVVKIVSGSKVALGVCGEMGGRPLEAMALLGLGIERLSITPAGVGP HHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCHHHEEECCCCCCH VKAMIRSLDLGALRADMPAMLAQPAPDPRGQYEQWALAHQVDLGT HHHHHHHCCHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 7896715; 8973315 [H]