Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is attM [H]

Identifier: 103487611

GI number: 103487611

Start: 2235358

End: 2236206

Strand: Direct

Name: attM [H]

Synonym: Sala_2130

Alternate gene names: 103487611

Gene position: 2235358-2236206 (Clockwise)

Preceding gene: 103487610

Following gene: 103487612

Centisome position: 66.82

GC content: 65.96

Gene sequence:

>849_bases
ATGATCGGGAAAGCTGTCATAACGATCGCGGCGGCACTGGCGCTCGCCACCCCCGCGCTGGCGCAGGACAGGCCCGCAGC
TGCGAAGCTCAGCCTGACCCGGCTCGATTGCGGGACGGTGCGCGTCAACCGGCTCAACGCCTTTTCGGATACCGAGGCCT
ATCCGGGGCAAAGCCGTGACCTGACGGTCGGTTGTTATCTCATCCGTCACGGCGACCAGCTGATGCTCTGGGATCTGGGC
CTGCCGACCGCGCTGAAGGGCGCGGCGTTCAACACCGACGGCGACATGTCGGCGACGGTGCGCACAAGCCTGGTCGAGCA
ACTCGCCGAGCTGGGCATCAAGCCCGAGGAGATCGACGTCGTCGGCGTCAGCCATTTCCACTTCGACCATATCGGTCAAT
TGCCCGATTTCCCGGCCGCGAAGCTCTACATCGGCAAACGCGACTGGGACTGGCTGATCGACAGCGGCCGCCCGGCGTGG
GTCAATCCCCAACCCTTTACCCACTGGATCGGCGGCGGCGGCGCGGTCGAGCCGGTCGAACGCGACAAGGACATTTTCGG
CGACGGTCGCGTGATGATGCTCGACATGCCGGGGCATACGCCGGGCCACCACGTGCTGCTCGTGCGGCTCGCCGGCATGG
GTCCGGTGCTGCTGAGCGGCGACCAGGCGCATTTTCAGGAAAATTACGACAGCGAAGGCGTGCCGGAGTTCAACACCGAC
CGCGCCCAGACGCTCGCGTCGTTCGACCGCTTCAAGGGGCTGGCGAAGAATCTGGGCGCGACGGTGATCATCCAGCACGA
GCCGCGCGACGTCGCCAAGCTGCCCCCCTTTCCCAAGGCGGCCGAATGA

Upstream 100 bases:

>100_bases
CTCGTCAGCCCCGCGATGGCCGCGGCGGCGGCGGTGACCGGAAAGCTCACCGACGTGCGCGAATTAATGGCATGAACGCA
GACAGAGGGAGCCGAAGGGC

Downstream 100 bases:

>100_bases
CATGACGCCGCTGAACCAGGTCGAGGGCCGCGCCATCCCGCTGGGCCTCAAAAATATCGACACCGACGTCATCATCCCTG
CGCACTGGCTGAAGACCACG

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: AHL-lactonase AttM [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRDLTVGCYLIRHGDQLMLWDLG
LPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDVVGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAW
VNPQPFTHWIGGGGAVEPVERDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD
RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE

Sequences:

>Translated_282_residues
MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRDLTVGCYLIRHGDQLMLWDLG
LPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDVVGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAW
VNPQPFTHWIGGGGAVEPVERDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD
RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE
>Mature_282_residues
MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRDLTVGCYLIRHGDQLMLWDLG
LPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDVVGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAW
VNPQPFTHWIGGGGAVEPVERDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD
RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: =3.1.1.81 [H]

Molecular weight: Translated: 30619; Mature: 30619

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRD
CCCHHHHHHHHHHHHHCCHHHCCCCCHHEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC
LTVGCYLIRHGDQLMLWDLGLPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDV
EEEEEEEEEECCEEEEEECCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
VGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAWVNPQPFTHWIGGGGAVEPVE
EEEEEECHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCC
RDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD
CCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEECCCHHHHHCCCCCCCCCCCCCH
RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHCCCCCCCCCC
>Mature Secondary Structure
MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRD
CCCHHHHHHHHHHHHHCCHHHCCCCCHHEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC
LTVGCYLIRHGDQLMLWDLGLPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDV
EEEEEEEEEECCEEEEEECCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
VGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAWVNPQPFTHWIGGGGAVEPVE
EEEEEECHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCC
RDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD
CCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEECCCHHHHHCCCCCCCCCCCCCH
RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA