| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is attM [H]
Identifier: 103487611
GI number: 103487611
Start: 2235358
End: 2236206
Strand: Direct
Name: attM [H]
Synonym: Sala_2130
Alternate gene names: 103487611
Gene position: 2235358-2236206 (Clockwise)
Preceding gene: 103487610
Following gene: 103487612
Centisome position: 66.82
GC content: 65.96
Gene sequence:
>849_bases ATGATCGGGAAAGCTGTCATAACGATCGCGGCGGCACTGGCGCTCGCCACCCCCGCGCTGGCGCAGGACAGGCCCGCAGC TGCGAAGCTCAGCCTGACCCGGCTCGATTGCGGGACGGTGCGCGTCAACCGGCTCAACGCCTTTTCGGATACCGAGGCCT ATCCGGGGCAAAGCCGTGACCTGACGGTCGGTTGTTATCTCATCCGTCACGGCGACCAGCTGATGCTCTGGGATCTGGGC CTGCCGACCGCGCTGAAGGGCGCGGCGTTCAACACCGACGGCGACATGTCGGCGACGGTGCGCACAAGCCTGGTCGAGCA ACTCGCCGAGCTGGGCATCAAGCCCGAGGAGATCGACGTCGTCGGCGTCAGCCATTTCCACTTCGACCATATCGGTCAAT TGCCCGATTTCCCGGCCGCGAAGCTCTACATCGGCAAACGCGACTGGGACTGGCTGATCGACAGCGGCCGCCCGGCGTGG GTCAATCCCCAACCCTTTACCCACTGGATCGGCGGCGGCGGCGCGGTCGAGCCGGTCGAACGCGACAAGGACATTTTCGG CGACGGTCGCGTGATGATGCTCGACATGCCGGGGCATACGCCGGGCCACCACGTGCTGCTCGTGCGGCTCGCCGGCATGG GTCCGGTGCTGCTGAGCGGCGACCAGGCGCATTTTCAGGAAAATTACGACAGCGAAGGCGTGCCGGAGTTCAACACCGAC CGCGCCCAGACGCTCGCGTCGTTCGACCGCTTCAAGGGGCTGGCGAAGAATCTGGGCGCGACGGTGATCATCCAGCACGA GCCGCGCGACGTCGCCAAGCTGCCCCCCTTTCCCAAGGCGGCCGAATGA
Upstream 100 bases:
>100_bases CTCGTCAGCCCCGCGATGGCCGCGGCGGCGGCGGTGACCGGAAAGCTCACCGACGTGCGCGAATTAATGGCATGAACGCA GACAGAGGGAGCCGAAGGGC
Downstream 100 bases:
>100_bases CATGACGCCGCTGAACCAGGTCGAGGGCCGCGCCATCCCGCTGGGCCTCAAAAATATCGACACCGACGTCATCATCCCTG CGCACTGGCTGAAGACCACG
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: AHL-lactonase AttM [H]
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRDLTVGCYLIRHGDQLMLWDLG LPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDVVGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAW VNPQPFTHWIGGGGAVEPVERDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE
Sequences:
>Translated_282_residues MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRDLTVGCYLIRHGDQLMLWDLG LPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDVVGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAW VNPQPFTHWIGGGGAVEPVERDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE >Mature_282_residues MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRDLTVGCYLIRHGDQLMLWDLG LPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDVVGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAW VNPQPFTHWIGGGGAVEPVERDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: =3.1.1.81 [H]
Molecular weight: Translated: 30619; Mature: 30619
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRD CCCHHHHHHHHHHHHHCCHHHCCCCCHHEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC LTVGCYLIRHGDQLMLWDLGLPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDV EEEEEEEEEECCEEEEEECCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEE VGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAWVNPQPFTHWIGGGGAVEPVE EEEEEECHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCC RDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD CCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEECCCHHHHHCCCCCCCCCCCCCH RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHCCCCCCCCCC >Mature Secondary Structure MIGKAVITIAAALALATPALAQDRPAAAKLSLTRLDCGTVRVNRLNAFSDTEAYPGQSRD CCCHHHHHHHHHHHHHCCHHHCCCCCHHEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC LTVGCYLIRHGDQLMLWDLGLPTALKGAAFNTDGDMSATVRTSLVEQLAELGIKPEEIDV EEEEEEEEEECCEEEEEECCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEE VGVSHFHFDHIGQLPDFPAAKLYIGKRDWDWLIDSGRPAWVNPQPFTHWIGGGGAVEPVE EEEEEECHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCC RDKDIFGDGRVMMLDMPGHTPGHHVLLVRLAGMGPVLLSGDQAHFQENYDSEGVPEFNTD CCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEECCCHHHHHCCCCCCCCCCCCCH RAQTLASFDRFKGLAKNLGATVIIQHEPRDVAKLPPFPKAAE HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA