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The map label for this gene is lpsJ [H]

Identifier: 103487605

GI number: 103487605

Start: 2230263

End: 2230898

Strand: Direct

Name: lpsJ [H]

Synonym: Sala_2124

Alternate gene names: 103487605

Gene position: 2230263-2230898 (Clockwise)

Preceding gene: 103487604

Following gene: 103487606

Centisome position: 66.67

GC content: 63.21

Gene sequence:

>636_bases
ATGCCCTGGACCCGCGACGATATGGCGGCGCGCGCCGCAAAAGAGCTGCAGGACGGCTATTATGTCAACCTCGGCATCGG
CATCCCGACGCTGGTGGCGAACCATATCCCCGCGGGGATGACGGTGACGCTCCAGTCCGAGAACGGGATGCTGGGGATCG
GCCCCTTTCCCTTTGAGGGGGAGGAAGACCCCGACCTGATCAACGCGGGCAAGCAGACGATCAGCGAGCTGCCGCAATCG
GCCTATTTCTCGTCGGCCGACAGCTTCGCGATGATCCGCGGCGGGCATATCGACCTGACCGTATTGGGCGCGATGGAAGT
CGCCGAAAATGGCGACATCGCCAACTGGATGATCCCCGGCAAGATGATCAAGGGCATGGGCGGCGCGATGGACCTGGTCG
CCGGGGTCAAGAAGATCATCGTCGTGATGGAGCACAATGCCAAGGACGGCAGCCCGAAGTTCATCCCCGAATGCACCCTG
CCGCTGACGGGCAAGAATGTCGTCGACATGATCATCACCGACCTTGCCGTCTTCCGCCGCGACGACCACGACAGCCCCTT
CCGCCTGATCGAACTCGCGCCGGGGGTGACGGCGGAGGACGTCGCGGCCAAGACGACGGCGCATTATATTGGCTGA

Upstream 100 bases:

>100_bases
GCATCCACCTGCCCGGCATCTATGTGAAGCGGATGATCGTCGGCGCGCCGTACGACAAGAAGATCGAGTTCCGCACCGTT
CGCCCGAGGGAGACCGCCTG

Downstream 100 bases:

>100_bases
ATATTGGCTGACGTCGCGGCGCATCCGGGCTCGCCCTGGTTGCTCGTCGGCGGCTGCCTGTCGATCATCGCCGCGCTCGC
GCACCTCGCCTGCATTTTCG

Product: 3-oxoacid CoA-transferase, subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MPWTRDDMAARAAKELQDGYYVNLGIGIPTLVANHIPAGMTVTLQSENGMLGIGPFPFEGEEDPDLINAGKQTISELPQS
AYFSSADSFAMIRGGHIDLTVLGAMEVAENGDIANWMIPGKMIKGMGGAMDLVAGVKKIIVVMEHNAKDGSPKFIPECTL
PLTGKNVVDMIITDLAVFRRDDHDSPFRLIELAPGVTAEDVAAKTTAHYIG

Sequences:

>Translated_211_residues
MPWTRDDMAARAAKELQDGYYVNLGIGIPTLVANHIPAGMTVTLQSENGMLGIGPFPFEGEEDPDLINAGKQTISELPQS
AYFSSADSFAMIRGGHIDLTVLGAMEVAENGDIANWMIPGKMIKGMGGAMDLVAGVKKIIVVMEHNAKDGSPKFIPECTL
PLTGKNVVDMIITDLAVFRRDDHDSPFRLIELAPGVTAEDVAAKTTAHYIG
>Mature_210_residues
PWTRDDMAARAAKELQDGYYVNLGIGIPTLVANHIPAGMTVTLQSENGMLGIGPFPFEGEEDPDLINAGKQTISELPQSA
YFSSADSFAMIRGGHIDLTVLGAMEVAENGDIANWMIPGKMIKGMGGAMDLVAGVKKIIVVMEHNAKDGSPKFIPECTLP
LTGKNVVDMIITDLAVFRRDDHDSPFRLIELAPGVTAEDVAAKTTAHYIG

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=206, Percent_Identity=57.2815533980583, Blast_Score=238, Evalue=3e-63,
Organism=Homo sapiens, GI11545841, Length=207, Percent_Identity=57.0048309178744, Blast_Score=233, Evalue=9e-62,
Organism=Escherichia coli, GI1788552, Length=205, Percent_Identity=53.6585365853659, Blast_Score=219, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17531517, Length=207, Percent_Identity=55.0724637681159, Blast_Score=230, Evalue=3e-61,
Organism=Drosophila melanogaster, GI21358325, Length=206, Percent_Identity=59.7087378640777, Blast_Score=256, Evalue=8e-69,
Organism=Drosophila melanogaster, GI24655794, Length=206, Percent_Identity=59.7087378640777, Blast_Score=255, Evalue=1e-68,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22585; Mature: 22454

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWTRDDMAARAAKELQDGYYVNLGIGIPTLVANHIPAGMTVTLQSENGMLGIGPFPFEG
CCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCC
EEDPDLINAGKQTISELPQSAYFSSADSFAMIRGGHIDLTVLGAMEVAENGDIANWMIPG
CCCCHHHHHHHHHHHHCCHHHHHCCCCCEEEEECCCEEEEEEEEEECCCCCCEEEEEECH
KMIKGMGGAMDLVAGVKKIIVVMEHNAKDGSPKFIPECTLPLTGKNVVDMIITDLAVFRR
HHHHCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
DDHDSPFRLIELAPGVTAEDVAAKTTAHYIG
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PWTRDDMAARAAKELQDGYYVNLGIGIPTLVANHIPAGMTVTLQSENGMLGIGPFPFEG
CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCC
EEDPDLINAGKQTISELPQSAYFSSADSFAMIRGGHIDLTVLGAMEVAENGDIANWMIPG
CCCCHHHHHHHHHHHHCCHHHHHCCCCCEEEEECCCEEEEEEEEEECCCCCCEEEEEECH
KMIKGMGGAMDLVAGVKKIIVVMEHNAKDGSPKFIPECTLPLTGKNVVDMIITDLAVFRR
HHHHCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
DDHDSPFRLIELAPGVTAEDVAAKTTAHYIG
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]