| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yihX [C]
Identifier: 103487602
GI number: 103487602
Start: 2227822
End: 2228469
Strand: Direct
Name: yihX [C]
Synonym: Sala_2121
Alternate gene names: 103487602
Gene position: 2227822-2228469 (Clockwise)
Preceding gene: 103487601
Following gene: 103487604
Centisome position: 66.6
GC content: 66.82
Gene sequence:
>648_bases ATGACCTACACCACCGTCATTTTCGATTTCGGCGGCGTCATCACCGCCTCGCCCTTCGAGGCATTCAACCGGCTGGAGGC CGAGCGCGGGCTGCCGCGCGATTTCATTCGCCGCGTCAACGCCGCCGACCCCGACGGCAACGCCTGGGCCCGCTTCGAGC GCGCCGAGATCGACGCCGCGGCGTTCGACAGCCTGTTCGCGTCCGAGGCGCGCGCGATGGGCCACGAACTGGAAGGCGAA GCGGTGCTGGCGGTGCTCGCCGGTGCGGTGCGTCCGGCGATGGTCGCGGCGCTCGACACGCTGAAAGCCCGCGACTTTGG CACTGGGTGCATCACCAACAATGTGCCGTCGGGCAAGGGCGCCGGGATGGCGCGCAGCGAAGAACTCGCGGCCGAAGTTG CGGCGATCATGGCGCGATTCGACCATGTGATCGAATCGAGCAAGGTCGGCGTGCGCAAGCCCGATCCGCGTATCTATGAA ATGATGTGCGAGGCGCTGGGCGTGCAGCCCGCCGAATGCGTCTATCTCGACGACCTTGGCATCAACTGCAAACCCGCAAG CCAGTTGGGGATGCACGCGATCAAGGTGACGAGCGGCGAACAGGCGCTCGCCGACCTGTCGGCGGTGCTGGGGATGGAGC TGCCCTGA
Upstream 100 bases:
>100_bases CGGCGATCGACACGCGCAAGGGCGGCGAAGCCGCGCTCGCCGCCTATCGCGAGATGCTGTCAGGCGCAGCCGACCCGCGG AAGGGAATCGTCGTCGTGCC
Downstream 100 bases:
>100_bases ATTGGCTGTTTTTTTGGGTGGGGAGTGGCCTGAAGCGATCCTCCCCCAACGGGGGAGGATCGCTTCAGGCCGCAATCGGT CGTTTCCGGCCGTCCGGTTC
Product: epoxide hydrolase domain-containing phosphatase
Products: NA
Alternate protein names: HAD Family Phosphatase; Epoxide Hydrolase Domain-Containing Phosphatase; Hydrolase; Phosphatase; HAD Superfamily Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; Phosphoglycolate Phosphatase; Epoxide Hydrolase-Like Phosphatase; Epoxide Hydrolase
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MTYTTVIFDFGGVITASPFEAFNRLEAERGLPRDFIRRVNAADPDGNAWARFERAEIDAAAFDSLFASEARAMGHELEGE AVLAVLAGAVRPAMVAALDTLKARDFGTGCITNNVPSGKGAGMARSEELAAEVAAIMARFDHVIESSKVGVRKPDPRIYE MMCEALGVQPAECVYLDDLGINCKPASQLGMHAIKVTSGEQALADLSAVLGMELP
Sequences:
>Translated_215_residues MTYTTVIFDFGGVITASPFEAFNRLEAERGLPRDFIRRVNAADPDGNAWARFERAEIDAAAFDSLFASEARAMGHELEGE AVLAVLAGAVRPAMVAALDTLKARDFGTGCITNNVPSGKGAGMARSEELAAEVAAIMARFDHVIESSKVGVRKPDPRIYE MMCEALGVQPAECVYLDDLGINCKPASQLGMHAIKVTSGEQALADLSAVLGMELP >Mature_214_residues TYTTVIFDFGGVITASPFEAFNRLEAERGLPRDFIRRVNAADPDGNAWARFERAEIDAAAFDSLFASEARAMGHELEGEA VLAVLAGAVRPAMVAALDTLKARDFGTGCITNNVPSGKGAGMARSEELAAEVAAIMARFDHVIESSKVGVRKPDPRIYEM MCEALGVQPAECVYLDDLGINCKPASQLGMHAIKVTSGEQALADLSAVLGMELP
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48976061, Length=220, Percent_Identity=33.6363636363636, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI211971008, Length=201, Percent_Identity=32.8358208955224, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI27597073, Length=227, Percent_Identity=30.3964757709251, Blast_Score=92, Evalue=3e-19, Organism=Escherichia coli, GI87082345, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17562446, Length=220, Percent_Identity=30.4545454545455, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17557590, Length=226, Percent_Identity=28.7610619469027, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71988582, Length=232, Percent_Identity=25, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22893; Mature: 22762
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTTVIFDFGGVITASPFEAFNRLEAERGLPRDFIRRVNAADPDGNAWARFERAEIDAA CCEEEEEEECCCCEECCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH AFDSLFASEARAMGHELEGEAVLAVLAGAVRPAMVAALDTLKARDFGTGCITNNVPSGKG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AGMARSEELAAEVAAIMARFDHVIESSKVGVRKPDPRIYEMMCEALGVQPAECVYLDDLG CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC INCKPASQLGMHAIKVTSGEQALADLSAVLGMELP CCCCCHHHHCCEEEEECCCHHHHHHHHHHHCCCCC >Mature Secondary Structure TYTTVIFDFGGVITASPFEAFNRLEAERGLPRDFIRRVNAADPDGNAWARFERAEIDAA CEEEEEEECCCCEECCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH AFDSLFASEARAMGHELEGEAVLAVLAGAVRPAMVAALDTLKARDFGTGCITNNVPSGKG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AGMARSEELAAEVAAIMARFDHVIESSKVGVRKPDPRIYEMMCEALGVQPAECVYLDDLG CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC INCKPASQLGMHAIKVTSGEQALADLSAVLGMELP CCCCCHHHHCCEEEEECCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA