Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487570

Identifier: 103487570

GI number: 103487570

Start: 2193821

End: 2195500

Strand: Direct

Name: 103487570

Synonym: Sala_2089

Alternate gene names: NA

Gene position: 2193821-2195500 (Clockwise)

Preceding gene: 103487568

Following gene: 103487571

Centisome position: 65.58

GC content: 70.65

Gene sequence:

>1680_bases
ATGCGCCCTTCGTCATGGGCAGACCGGCTGCTCGCGCTCTCGGCCCGCTTCGTCGGGTTCGTCATCCTCATCGCCACGCT
CGCCGCCGCGGCGGGCAGCTTCTTTTACAATCGCGCCGACGAGCGCGCCCGCGCCGAGCGCGTCGCGATGCAGATCGACA
CGCGGCTGCGCGATCATGTCGCGCTGCTCGAAGGGGTGCGCGCGCTCTATCGGTCGGACAGCCGGTCGAGCGGTCCCGGC
GTCCGCGCCTATCTCAACGCGCTGCAGCCGCAGGTCCATGCGCCGGGGCTGGAGGGGATCGGCATCGCGGTCGCGATGCG
CCAGCGGACCCCCGCCGCGGCCGAGGCGATGCTGCGCGAAAATTACGGCCGCGACATTGCGGTCTGGCCGGTCAGCGACC
AGCCCATCGGCTTTCCGATCGTCCTGCTCGAACCTCCGACGCCGCGCCGCGACCAGGCGCTGGGGTATGACATGTACAGC
GAGCCGGTACGCCGCGCGGCGATGCGCCGGGCCTGGCAGACGGGAGCGCCCGCGGCGAGCGGCATCGTCGAGCTGGTGCA
GGAAGGGGCGGCGACGCGGCGCCAGGCGGGGTTCCTCATCTATGTCCCCGTCTATGCCGACCAGCCGGCGCCCGGCGTCG
GCGCCCCTGCGCTCCCCGGCGACCCGCCGCGCGCCGCGACCCGTGCCAGCGCGCCGGGCGCGCGGCCGATCGAGGCGTTC
GTCTATGCGCCCTTCCGCATCGACGACCTGATGACCGCAATCCTCGGCGCGCAGCTCGACACGATCGACGGGATCGAAAT
CCGTGCCGGCGAAGGACCGGCGGCGCCGCTCGCCTATCGTCACGGCACGATGGGCTGGGACCCGCACGAACAGGTGCTGC
GCGTCGCCGACCGCCAGTGGACGATGCGCATTTCCTACAGCCGCCTGTTCGAGCGGCTCGGCCGGCCGGTCGCCATCTTC
CTCTTCGGCTTTGCGATCATGCTGCTCGCAATGCAGCTCATGCGGCTCCAGCACCGCCGCGTCGACGCCTTTCGCGCGCT
CGCCGACGAACAGGCGCTGCGCGCCGCAGACCGCGAGCTGATGATCGGCGAAATGGCGCACCGGATGAAGAACGCCTTTG
CGCGCATCGGCGCGCTCGCGCGCATAACCTTGCGCGAATCGGCCAGCCTCGACGAGTTCGAGGCGAAGTTCGACGGCCGG
ATGCGCGCGCTGTCCGATGCCAAGCAGATGCTCGTCACCGGCGCGGTCGACACGGTCGAACTCGAACGCATCGTCCACCG
CGAGCTCGACCTCGCCGGGGTTCCACCCGACCGGCTTGCCGCCATCACCGGCCCCGCGGTGCGGCTCGATGACGAGGGCG
CGCAGGCGATCTCGCTCGCGGTCCACGAATTCGTCACCAACAGCATCAAATATGGCGCGCTGGCGGGCGAGGGCGAGCTC
AGCGTCGGCTGGCACCGCGAGGATGGTCAGGTGACGCTCGACTGGACCGAAAGCGGGCTGCCCGAAACCCCGAATATCGA
GCAGGAAAGTTTCGGCACCCGGTTCATCCGCACGCTGATCGAACGTCAGCTCAAAGGGAGATGGACGCGCACCGCCGCCG
CGGGGCGGCTCTCGATCGTCATCCGCTGGCCCGATGCCGCCTCGGCGACCGGCGCGACCGCAGCGTCGCCCGCACGTTGA

Upstream 100 bases:

>100_bases
CCGTTATGGTATGAAATAAACTTGCCATCGGCGGCGCGGCATGGAAGATCGGGCGCCAGAGGGGGGCGCTGCTGCGGCAG
CCAGCAGGCAGGACAGAGAC

Downstream 100 bases:

>100_bases
CAAGCCGCGTCCTCCCGGCGAGAGACGGGCCGGGAGGGGGAGAGACGCCGCCATGACCGCAAAGATGCTGCGCCCGACTT
CGTTCGACGTCGCCGAGCGC

Product: signal transduction histidine kinase

Products: NA

Alternate protein names: EL360-LOV-histidine kinase; EL360-LOV-HK [H]

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHVALLEGVRALYRSDSRSSGPG
VRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRENYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYS
EPVRRAAMRRAWQTGAPAASGIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF
VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQWTMRISYSRLFERLGRPVAIF
LFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADRELMIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGR
MRALSDAKQMLVTGAVDTVELERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL
SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIVIRWPDAASATGATAASPAR

Sequences:

>Translated_559_residues
MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHVALLEGVRALYRSDSRSSGPG
VRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRENYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYS
EPVRRAAMRRAWQTGAPAASGIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF
VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQWTMRISYSRLFERLGRPVAIF
LFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADRELMIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGR
MRALSDAKQMLVTGAVDTVELERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL
SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIVIRWPDAASATGATAASPAR
>Mature_559_residues
MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHVALLEGVRALYRSDSRSSGPG
VRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRENYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYS
EPVRRAAMRRAWQTGAPAASGIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF
VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQWTMRISYSRLFERLGRPVAIF
LFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADRELMIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGR
MRALSDAKQMLVTGAVDTVELERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL
SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIVIRWPDAASATGATAASPAR

Specific function: Photosensitive kinase that is involved in increased bacterial virulence upon exposure to light [H]

COG id: COG3614

COG function: function code T; Predicted periplasmic ligand-binding sensor domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR011102 [H]

Pfam domain/function: PF07536 HWE_HK; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 61149; Mature: 61149

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50839 CHASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLEGVRALYRSDSRSSGPGVRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRE
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
NYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYSEPVRRAAMRRAWQTGAPAAS
CCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
GIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF
HHHHHHHHCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEE
VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQW
EECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCHH
TMRISYSRLFERLGRPVAIFLFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADREL
EEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGRMRALSDAKQMLVTGAVDTVE
HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHH
LERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL
HHHHHHHHCCCCCCCHHHHHEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCE
SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIV
EEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCEEEEE
IRWPDAASATGATAASPAR
EECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLEGVRALYRSDSRSSGPGVRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRE
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
NYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYSEPVRRAAMRRAWQTGAPAAS
CCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
GIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF
HHHHHHHHCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEE
VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQW
EECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCHH
TMRISYSRLFERLGRPVAIFLFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADREL
EEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGRMRALSDAKQMLVTGAVDTVE
HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHH
LERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL
HHHHHHHHCCCCCCCHHHHHEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCE
SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIV
EEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCEEEEE
IRWPDAASATGATAASPAR
EECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA