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The map label for this gene is ycdI [C]

Identifier: 103487551

GI number: 103487551

Start: 2178296

End: 2178889

Strand: Reverse

Name: ycdI [C]

Synonym: Sala_2070

Alternate gene names: 103487551

Gene position: 2178889-2178296 (Counterclockwise)

Preceding gene: 103487552

Following gene: 103487550

Centisome position: 65.14

GC content: 62.46

Gene sequence:

>594_bases
ATGAGCGAGCCGCTTTCCGACAGCGCTCTCGACCAGCTTTTTCGCACCGCGCGCACCTATAACGGCTATCTCGACAAGCC
GGTGTCGGAGGCGCAGCTGCACGCCATCTGGGATCTGATGAAGTTCGGGCCGACGAGCGCGAACAGCCTGCCGGCGCGGA
TCGTCTGGTGCATGTCGGATGCGGCGAAAGAGAAGCTCGCGGCGCACGCGATGCCCGCCAATGCCGAAAAGATCCTCGCC
GCGCCGGTTACCGCGATCATCGCCATGGACCTTGAGTTTTACGAACATTTGCCCGAGTTTTTCCCGCACACCGACGCGCG
CAGCTGGTTTGCGGGCAAGGATGCGCTTGCCGAGACGACCGCCTTCCGTAATTCGAGCCTGCAGGGCGCCTATTTTCTGC
TCGCGGCGCGTGCGCTCGGGCTCGATACCGGCCCGATGTCGGGGTTCGACAATGACGCGGTCGACAAGGCCTTCTTTGCC
GATCAACCGAAGGTGAAGAGCAATTTCATCTCGACGCTCGGCTATGGCGATCCCGCGACGATCTTCGACCGCAGCCCGCG
GCCGGACTTTGATCGCTTCAACCGCCTTGTCTGA

Upstream 100 bases:

>100_bases
GCAACGCTGAAAAATGGCATCGAGTCGCTCTTGAAACATTATGTGCCCGAGGTAACGGCAGTTCACGCCGTCTGACCCAT
CCGTTTCAGGAGACCAATCT

Downstream 100 bases:

>100_bases
CGCGCCAACGCTCGTCATCGATTCCGCCAGCGAGGCCTGCTCGGTCGCGCTGGTGGCAGGCGGGCGCGTCGTCGACTTTC
GCCATGAGGTGATCGGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSEPLSDSALDQLFRTARTYNGYLDKPVSEAQLHAIWDLMKFGPTSANSLPARIVWCMSDAAKEKLAAHAMPANAEKILA
APVTAIIAMDLEFYEHLPEFFPHTDARSWFAGKDALAETTAFRNSSLQGAYFLLAARALGLDTGPMSGFDNDAVDKAFFA
DQPKVKSNFISTLGYGDPATIFDRSPRPDFDRFNRLV

Sequences:

>Translated_197_residues
MSEPLSDSALDQLFRTARTYNGYLDKPVSEAQLHAIWDLMKFGPTSANSLPARIVWCMSDAAKEKLAAHAMPANAEKILA
APVTAIIAMDLEFYEHLPEFFPHTDARSWFAGKDALAETTAFRNSSLQGAYFLLAARALGLDTGPMSGFDNDAVDKAFFA
DQPKVKSNFISTLGYGDPATIFDRSPRPDFDRFNRLV
>Mature_196_residues
SEPLSDSALDQLFRTARTYNGYLDKPVSEAQLHAIWDLMKFGPTSANSLPARIVWCMSDAAKEKLAAHAMPANAEKILAA
PVTAIIAMDLEFYEHLPEFFPHTDARSWFAGKDALAETTAFRNSSLQGAYFLLAARALGLDTGPMSGFDNDAVDKAFFAD
QPKVKSNFISTLGYGDPATIFDRSPRPDFDRFNRLV

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787243, Length=191, Percent_Identity=54.4502617801047, Blast_Score=204, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21731; Mature: 21599

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPLSDSALDQLFRTARTYNGYLDKPVSEAQLHAIWDLMKFGPTSANSLPARIVWCMSD
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AAKEKLAAHAMPANAEKILAAPVTAIIAMDLEFYEHLPEFFPHTDARSWFAGKDALAETT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHH
AFRNSSLQGAYFLLAARALGLDTGPMSGFDNDAVDKAFFADQPKVKSNFISTLGYGDPAT
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCH
IFDRSPRPDFDRFNRLV
HCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
SEPLSDSALDQLFRTARTYNGYLDKPVSEAQLHAIWDLMKFGPTSANSLPARIVWCMSD
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AAKEKLAAHAMPANAEKILAAPVTAIIAMDLEFYEHLPEFFPHTDARSWFAGKDALAETT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHH
AFRNSSLQGAYFLLAARALGLDTGPMSGFDNDAVDKAFFADQPKVKSNFISTLGYGDPAT
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCH
IFDRSPRPDFDRFNRLV
HCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA