Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is yeaZ [H]
Identifier: 103487550
GI number: 103487550
Start: 2177677
End: 2178303
Strand: Reverse
Name: yeaZ [H]
Synonym: Sala_2069
Alternate gene names: 103487550
Gene position: 2178303-2177677 (Counterclockwise)
Preceding gene: 103487551
Following gene: 103487549
Centisome position: 65.12
GC content: 73.68
Gene sequence:
>627_bases TTGTCTGACGCGCCAACGCTCGTCATCGATTCCGCCAGCGAGGCCTGCTCGGTCGCGCTGGTGGCAGGCGGGCGCGTCGT CGACTTTCGCCATGAGGTGATCGGGCGCGGCCACGCCGAGCGCCTCGTTCCGCTGATCGCCGAACTCGCGGACGGCGGGC GCGCCGATGCCATCGCGATCGGCTGCGGCCCCGGCAGTTTCGCCGGCGTGCGGATCGGCGTCGCCGCGGCGCGCGCGCTC GCGCTTGGCTGGCAGGTACCCGCGCATGGCTTTTCGACCCTCGCCCTCGTCGCGGCCGGTGCGGCCGATCCGATCGGCGA GGCGGGCGGCGCGCTCGTCGTGATGGAGGGCGGTCACGGCCAATGGTTCGTCCAGCCCTTTGCCGCCGACCTGTCGCCGC GCGCCGATGCGTGTTCGCTGCTTCCCGACGCGGCGGTCGCGCTGAACGATGTGCTCATCGTCGGCAATCGCGCCGAGGCC TTCGTTGCGCGCCGCGGGTCGGGGCGCGCGCTGGCCATGCTGCCCGACGCGCGCGCATTTCTGCGCCTGCCGCGCGGCGC GCTGACCAACCCGCCGAGCCCCATTTATGGTCGCGCGCCCGACGCCCGACCGATGAGCGGCGCATGA
Upstream 100 bases:
>100_bases CCGAAGGTGAAGAGCAATTTCATCTCGACGCTCGGCTATGGCGATCCCGCGACGATCTTCGACCGCAGCCCGCGGCCGGA CTTTGATCGCTTCAACCGCC
Downstream 100 bases:
>100_bases CCGGCGCGATCCGCATCGCCACCGCGCGGGTCGGCGACGTTGCCGCGGTGATGCGCGTGATGGACGCCGCCTTCGATCCC GCCTATGGCGAGGCGTGGAG
Product: peptidase M22, glycoprotease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MSDAPTLVIDSASEACSVALVAGGRVVDFRHEVIGRGHAERLVPLIAELADGGRADAIAIGCGPGSFAGVRIGVAAARAL ALGWQVPAHGFSTLALVAAGAADPIGEAGGALVVMEGGHGQWFVQPFAADLSPRADACSLLPDAAVALNDVLIVGNRAEA FVARRGSGRALAMLPDARAFLRLPRGALTNPPSPIYGRAPDARPMSGA
Sequences:
>Translated_208_residues MSDAPTLVIDSASEACSVALVAGGRVVDFRHEVIGRGHAERLVPLIAELADGGRADAIAIGCGPGSFAGVRIGVAAARAL ALGWQVPAHGFSTLALVAAGAADPIGEAGGALVVMEGGHGQWFVQPFAADLSPRADACSLLPDAAVALNDVLIVGNRAEA FVARRGSGRALAMLPDARAFLRLPRGALTNPPSPIYGRAPDARPMSGA >Mature_207_residues SDAPTLVIDSASEACSVALVAGGRVVDFRHEVIGRGHAERLVPLIAELADGGRADAIAIGCGPGSFAGVRIGVAAARALA LGWQVPAHGFSTLALVAAGAADPIGEAGGALVVMEGGHGQWFVQPFAADLSPRADACSLLPDAAVALNDVLIVGNRAEAF VARRGSGRALAMLPDARAFLRLPRGALTNPPSPIYGRAPDARPMSGA
Specific function: Unknown
COG id: COG1214
COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M22 family [H]
Homologues:
Organism=Escherichia coli, GI1788109, Length=100, Percent_Identity=46, Blast_Score=75, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022496 - InterPro: IPR000905 [H]
Pfam domain/function: PF00814 Peptidase_M22 [H]
EC number: NA
Molecular weight: Translated: 20957; Mature: 20826
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAPTLVIDSASEACSVALVAGGRVVDFRHEVIGRGHAERLVPLIAELADGGRADAIAI CCCCCEEEEECCCCCEEEEEEECCEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE GCGPGSFAGVRIGVAAARALALGWQVPAHGFSTLALVAAGAADPIGEAGGALVVMEGGHG ECCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCC QWFVQPFAADLSPRADACSLLPDAAVALNDVLIVGNRAEAFVARRGSGRALAMLPDARAF EEEEEEECCCCCCCCCHHHHCCCHHHEECCEEEECCCHHEEEEECCCCCEEEECCCCHHH LRLPRGALTNPPSPIYGRAPDARPMSGA HHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SDAPTLVIDSASEACSVALVAGGRVVDFRHEVIGRGHAERLVPLIAELADGGRADAIAI CCCCEEEEECCCCCEEEEEEECCEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE GCGPGSFAGVRIGVAAARALALGWQVPAHGFSTLALVAAGAADPIGEAGGALVVMEGGHG ECCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCC QWFVQPFAADLSPRADACSLLPDAAVALNDVLIVGNRAEAFVARRGSGRALAMLPDARAF EEEEEEECCCCCCCCCHHHHCCCHHHEECCEEEECCCHHEEEEECCCCCEEEECCCCHHH LRLPRGALTNPPSPIYGRAPDARPMSGA HHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]