Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487538
Identifier: 103487538
GI number: 103487538
Start: 2166468
End: 2167001
Strand: Reverse
Name: 103487538
Synonym: Sala_2057
Alternate gene names: NA
Gene position: 2167001-2166468 (Counterclockwise)
Preceding gene: 103487541
Following gene: 103487537
Centisome position: 64.78
GC content: 66.48
Gene sequence:
>534_bases ATGAAACCCCTGGCTCTTGCCGCTCTTGCCGCCGCTTCGCTCAGCCTGACCGGCTGCGGCGAAAATCTGGGCGCGGGGCA ACAACTCAACGTCGTCAGCGGCCATGTCGTGATGGGTGCGACGCCCGACCGCCCCGCGGTCGGCTATTTCCGCGTCGAGG GCGGCCCGCGCGACGTCGAACTGGTGGCGGTGACCGCCGACCTCGCGCAGCGCGTCGAGATGCACGAAAGTGTGCGCGAA AACGGCATGATGGTGATGAAGCCGCTCGAACGCGCGGCCGTGCCCGCCAACGGCGAACTCGTCTTCAAACAGGGCGGCAA GCATCTGATGATCTGGGGCATCAACGGCGCCGCGGTGCGCGCGGGCAAGCTGCCGATGGCGTTCGTCTTCACCAACAACA ATAATGAACGCATCCTCTTCGACATGGTGATCAAGCCCGCCGAAGGCGGCGCGGGCGGCGAAGCGGCGATGGACCATGAT GCGATGGGGCACGGACCGATGGACAAGGGCGGGGCGGACGCAGCCGCGAAGTAG
Upstream 100 bases:
>100_bases GGTTCATGGGCGCGATATAGGTGCGCTAATCCTTGGCACAAGGGCTTTGAAGGCTTATCGGGGGGAGGAAAATGTTGCGC TTTTACGGAGTCCTCCCGAA
Downstream 100 bases:
>100_bases GATCATGCTGCATCCCGATGCTGTCATTGCGAGGAGCGAAGCGACGAAGCAATCTCCAGTGTGCGGTCGTCGATCATGGC CGACGGCTGGAGATTGCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MKPLALAALAAASLSLTGCGENLGAGQQLNVVSGHVVMGATPDRPAVGYFRVEGGPRDVELVAVTADLAQRVEMHESVRE NGMMVMKPLERAAVPANGELVFKQGGKHLMIWGINGAAVRAGKLPMAFVFTNNNNERILFDMVIKPAEGGAGGEAAMDHD AMGHGPMDKGGADAAAK
Sequences:
>Translated_177_residues MKPLALAALAAASLSLTGCGENLGAGQQLNVVSGHVVMGATPDRPAVGYFRVEGGPRDVELVAVTADLAQRVEMHESVRE NGMMVMKPLERAAVPANGELVFKQGGKHLMIWGINGAAVRAGKLPMAFVFTNNNNERILFDMVIKPAEGGAGGEAAMDHD AMGHGPMDKGGADAAAK >Mature_177_residues MKPLALAALAAASLSLTGCGENLGAGQQLNVVSGHVVMGATPDRPAVGYFRVEGGPRDVELVAVTADLAQRVEMHESVRE NGMMVMKPLERAAVPANGELVFKQGGKHLMIWGINGAAVRAGKLPMAFVFTNNNNERILFDMVIKPAEGGAGGEAAMDHD AMGHGPMDKGGADAAAK
Specific function: Unknown
COG id: COG2847
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18330; Mature: 18330
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 6.8 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 6.8 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPLALAALAAASLSLTGCGENLGAGQQLNVVSGHVVMGATPDRPAVGYFRVEGGPRDVE CCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEECEEEECCCCCCCCEEEEEECCCCCCEE LVAVTADLAQRVEMHESVRENGMMVMKPLERAAVPANGELVFKQGGKHLMIWGINGAAVR EEEEEHHHHHHHHHHHHHHHCCEEEEECHHHHCCCCCCEEEEECCCCEEEEEECCCCEEE AGKLPMAFVFTNNNNERILFDMVIKPAEGGAGGEAAMDHDAMGHGPMDKGGADAAAK ECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKPLALAALAAASLSLTGCGENLGAGQQLNVVSGHVVMGATPDRPAVGYFRVEGGPRDVE CCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEECEEEECCCCCCCCEEEEEECCCCCCEE LVAVTADLAQRVEMHESVRENGMMVMKPLERAAVPANGELVFKQGGKHLMIWGINGAAVR EEEEEHHHHHHHHHHHHHHHCCEEEEECHHHHCCCCCCEEEEECCCCEEEEEECCCCEEE AGKLPMAFVFTNNNNERILFDMVIKPAEGGAGGEAAMDHDAMGHGPMDKGGADAAAK ECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA