Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487535

Identifier: 103487535

GI number: 103487535

Start: 2163426

End: 2164130

Strand: Direct

Name: 103487535

Synonym: Sala_2054

Alternate gene names: NA

Gene position: 2163426-2164130 (Clockwise)

Preceding gene: 103487534

Following gene: 103487539

Centisome position: 64.67

GC content: 70.78

Gene sequence:

>705_bases
ATGATCCGCTTGTTGCCCCTGCTCGCGCTCCCCGCGCTCGCCGCCTGCGTCCCCGCCACCGATAATCCGCAAGGCCCCGG
CGAGGCTCCCGCAGCCTATATGGCGCTGGGCACCGAACCCGGCTGGACGCTGGAGATCACGCCCGCGCGGCTGAACTATG
CCGGCGACTATGGCGAGACGATGATCGCGGTGCCCAATCCGGGCGCGCAGACCACCACGACGGGCAAACGCTACACCGCC
GACCGGCTGACGGTCGAGGTGCGGCCGGGGCCGTGCAGCGACGGGATGAGCGACCGCCGCTATGCCGACACCGTGACGGT
CACCGCCGACGGCAAGCGGGTGACGGGATGCGGCGGAGACATATTGCCGCCCGATGCGCTCGCGGGAACGAGCTGGACCT
TCGTATCGATCGCCGGCGCGCCCGTCGCCCCCGACCGCCCCACCTCGCTGGCGTTCACGGACGACCGGCTGAGCGGCAGC
GCGGGGTGCAACCGCTTTTCGGGCAGCTACAGGGTGGCCGACGACATGCTCTCCGCGGGGCCGCTGATGGCGACGAAAAT
GGCGTGCCCCGGCGCGGGCATGGCGCAGGAAAGCGCCTTCTTCGCGCTGATGCGCGGGCCGGTGCGCCTGAGCTTTCCGA
CCGACGGGACGCTGGAGATCAGCGGCGAAGGCGGGCAGACCGCGGTGCTGAAACGGGTGATATGA

Upstream 100 bases:

>100_bases
TCCCGTTCGCATCGAGCGAAGTCGAGATGGCGCTCGACCATGCGCCACGCCGATGGGTGTCTCGACTTCGCTCGACACGA
GCGGAGTAAAGGAGCTTGTG

Downstream 100 bases:

>100_bases
TCCCTGCCCGGATAGACCAGAATAGCGTCATCCCGGCGAAGGCCGGGATCTCACCGTCTCAGCCTCGCGCACCGGCGAGA
CCCCGGCCTTCGCCGGGGTG

Product: protein of unknown function DUF306, Meta and HslJ

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGETMIAVPNPGAQTTTTGKRYTA
DRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGDILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGS
AGCNRFSGSYRVADDMLSAGPLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI

Sequences:

>Translated_234_residues
MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGETMIAVPNPGAQTTTTGKRYTA
DRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGDILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGS
AGCNRFSGSYRVADDMLSAGPLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI
>Mature_234_residues
MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGETMIAVPNPGAQTTTTGKRYTA
DRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGDILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGS
AGCNRFSGSYRVADDMLSAGPLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI

Specific function: Unknown

COG id: COG3187

COG function: function code O; Heat shock protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24189; Mature: 24189

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGET
CEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHEEEECCCCCCE
MIAVPNPGAQTTTTGKRYTADRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGD
EEEECCCCCCCCCCCCEEEECEEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEECCCCC
ILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGSAGCNRFSGSYRVADDMLSAG
CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCC
PLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI
CCEEEEECCCCCCCCHHHHEEEEECCCEEEECCCCCEEEEECCCCCHHHHHHCC
>Mature Secondary Structure
MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGET
CEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHEEEECCCCCCE
MIAVPNPGAQTTTTGKRYTADRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGD
EEEECCCCCCCCCCCCEEEECEEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEECCCCC
ILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGSAGCNRFSGSYRVADDMLSAG
CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCC
PLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI
CCEEEEECCCCCCCCHHHHEEEEECCCEEEECCCCCEEEEECCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA