| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487535
Identifier: 103487535
GI number: 103487535
Start: 2163426
End: 2164130
Strand: Direct
Name: 103487535
Synonym: Sala_2054
Alternate gene names: NA
Gene position: 2163426-2164130 (Clockwise)
Preceding gene: 103487534
Following gene: 103487539
Centisome position: 64.67
GC content: 70.78
Gene sequence:
>705_bases ATGATCCGCTTGTTGCCCCTGCTCGCGCTCCCCGCGCTCGCCGCCTGCGTCCCCGCCACCGATAATCCGCAAGGCCCCGG CGAGGCTCCCGCAGCCTATATGGCGCTGGGCACCGAACCCGGCTGGACGCTGGAGATCACGCCCGCGCGGCTGAACTATG CCGGCGACTATGGCGAGACGATGATCGCGGTGCCCAATCCGGGCGCGCAGACCACCACGACGGGCAAACGCTACACCGCC GACCGGCTGACGGTCGAGGTGCGGCCGGGGCCGTGCAGCGACGGGATGAGCGACCGCCGCTATGCCGACACCGTGACGGT CACCGCCGACGGCAAGCGGGTGACGGGATGCGGCGGAGACATATTGCCGCCCGATGCGCTCGCGGGAACGAGCTGGACCT TCGTATCGATCGCCGGCGCGCCCGTCGCCCCCGACCGCCCCACCTCGCTGGCGTTCACGGACGACCGGCTGAGCGGCAGC GCGGGGTGCAACCGCTTTTCGGGCAGCTACAGGGTGGCCGACGACATGCTCTCCGCGGGGCCGCTGATGGCGACGAAAAT GGCGTGCCCCGGCGCGGGCATGGCGCAGGAAAGCGCCTTCTTCGCGCTGATGCGCGGGCCGGTGCGCCTGAGCTTTCCGA CCGACGGGACGCTGGAGATCAGCGGCGAAGGCGGGCAGACCGCGGTGCTGAAACGGGTGATATGA
Upstream 100 bases:
>100_bases TCCCGTTCGCATCGAGCGAAGTCGAGATGGCGCTCGACCATGCGCCACGCCGATGGGTGTCTCGACTTCGCTCGACACGA GCGGAGTAAAGGAGCTTGTG
Downstream 100 bases:
>100_bases TCCCTGCCCGGATAGACCAGAATAGCGTCATCCCGGCGAAGGCCGGGATCTCACCGTCTCAGCCTCGCGCACCGGCGAGA CCCCGGCCTTCGCCGGGGTG
Product: protein of unknown function DUF306, Meta and HslJ
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGETMIAVPNPGAQTTTTGKRYTA DRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGDILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGS AGCNRFSGSYRVADDMLSAGPLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI
Sequences:
>Translated_234_residues MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGETMIAVPNPGAQTTTTGKRYTA DRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGDILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGS AGCNRFSGSYRVADDMLSAGPLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI >Mature_234_residues MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGETMIAVPNPGAQTTTTGKRYTA DRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGDILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGS AGCNRFSGSYRVADDMLSAGPLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI
Specific function: Unknown
COG id: COG3187
COG function: function code O; Heat shock protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24189; Mature: 24189
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGET CEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHEEEECCCCCCE MIAVPNPGAQTTTTGKRYTADRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGD EEEECCCCCCCCCCCCEEEECEEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEECCCCC ILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGSAGCNRFSGSYRVADDMLSAG CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCC PLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI CCEEEEECCCCCCCCHHHHEEEEECCCEEEECCCCCEEEEECCCCCHHHHHHCC >Mature Secondary Structure MIRLLPLLALPALAACVPATDNPQGPGEAPAAYMALGTEPGWTLEITPARLNYAGDYGET CEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHEEEECCCCCCE MIAVPNPGAQTTTTGKRYTADRLTVEVRPGPCSDGMSDRRYADTVTVTADGKRVTGCGGD EEEECCCCCCCCCCCCEEEECEEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEECCCCC ILPPDALAGTSWTFVSIAGAPVAPDRPTSLAFTDDRLSGSAGCNRFSGSYRVADDMLSAG CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCC PLMATKMACPGAGMAQESAFFALMRGPVRLSFPTDGTLEISGEGGQTAVLKRVI CCEEEEECCCCCCCCHHHHEEEEECCCEEEECCCCCEEEEECCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA